TSS: Rfmm 98298.1: Difference between revisions

Latest revision as of 11:02, 20 March 2025

Basic information about the TSS

TSS ID:	rfmm_98298.1
Species:	mouse
Chr:	chr10

Start:	82648034
End:	82648043
Strand:	+

Source datasets

FANTOM5

Protocol

CAGE

TSS cluster detected^*

1

* The number of TSS cluster called data-sets (maximum 5)

cCREs annotation

Description:	PLS,CTCF-bound (EM10D2333000,EM10E0961214)
Category:	PLS

* cCREs are candidates for cis regulatory elements generated from the subset of representative DNase hypersensitivity sites supported by either histone modifications or CTCF-binding data. Find more details here.

Gene and protein annotation

Nearest transcript id and distance:	ENSMUST00000178540.8:-77 ENSMUST00000076984.8:-77 AK006461:-77
GeneID:	70003
HGNC/MGI_ID:	MGI:1917253
UniProt_ID:	Q8CF33
Nearer transcript ids and distances:

Gene_name:	RIKEN cDNA 1700028I16 gene
Gene_symbol:	1700028I16Rik
Gene_synonyms:
Gene_source:	MGI:1917253

TATA-Box annotation

Distance to TSS:	81
Nearest PromoterID:	NR_038042.1
Entrez ID:	1700028I16Rik
Nearest Unigene:	NR_038042
Nearest Refseq:
Nearest Ensembl:
Gene Name:	RIKEN cDNA 1700028I16 gene
Gene Alias:
Gene Type:
CpG%:	0.111111
GC%:	0.800000
TATA-Box(TBP)/Promoter/Homer Distance From Peak(sequence,strand,conservation):

TSS expression

Expression data not found.

@@ Line 1: / Line 1: @@
 {{TSSDetailV4
+|all_trans=ENSMUST00000178540.8:-77 ENSMUST00000076984.8:-77 NR_038042.1:-77 AK006461:-77
 |annotation=promoter-TSS (NR_038042.1)
 |ccre_category=PLS
@@ Line 15: / Line 16: @@
 |gene_description=
 |gene_id=70003
-|gene_name=1700028I16Rik
+|gene_name=RIKEN cDNA 1700028I16 gene
 |gene_source=MGI:1917253
 |gene_symbol=1700028I16Rik
@@ Line 25: / Line 26: @@
 |nearest_promoter_id=NR_038042.1
 |nearest_refseq=
+|nearest_transcripts=
 |nearest_unigene=NR_038042
 |peak_score=1