TSS: Rfmm 99516.1: Difference between revisions

Latest revision as of 11:22, 20 March 2025

Basic information about the TSS

TSS ID:	rfmm_99516.1
Species:	mouse
Chr:	chr10

Start:	99595481
End:	99595491
Strand:	-

Source datasets

FANTOM5

Protocol

CAGE

TSS cluster detected^*

1

* The number of TSS cluster called data-sets (maximum 5)

cCREs annotation

Description:	-
Category:	-

* cCREs are candidates for cis regulatory elements generated from the subset of representative DNase hypersensitivity sites supported by either histone modifications or CTCF-binding data. Find more details here.

Gene and protein annotation

Nearest transcript id and distance:	ENSMUST00000056085.6:-29 AK005713:-29
GeneID:	71832
HGNC/MGI_ID:	MGI:1913356 MGI:1919082
UniProt_ID:	Q80X68 Q9DAM4
Nearer transcript ids and distances:	AK161295:155 BC050750:163 view more...

Gene_name:	citrate synthase like; small muscle protein, X-linked
Gene_symbol:	Csl Smpx
Gene_synonyms:	1010001C09Rik 1700007H16Rik Csl chisel
Gene_source:	MGI:1913356 MGI:1919082

TATA-Box annotation

Distance to TSS:	34
Nearest PromoterID:	NM_027945.3
Entrez ID:	Csl
Nearest Unigene:	NM_027945
Nearest Refseq:
Nearest Ensembl:
Gene Name:	citrate synthase like; small muscle protein, X-linked
Gene Alias:
Gene Type:
CpG%:	0.000000
GC%:	0.545455
TATA-Box(TBP)/Promoter/Homer Distance From Peak(sequence,strand,conservation):

TSS expression

Expression data not found.

@@ Line 1: / Line 1: @@
 {{TSSDetailV4
+|all_trans=ENSMUST00000056085.6:-29 NM_027945.3:-29 AK005713:-29 AK161295:155 BC050750:163
 |annotation=promoter-TSS (NM_027945.3)
 |ccre_category=N
@@ Line 15: / Line 16: @@
 |gene_description=
 |gene_id=71832
-|gene_name=Csl
+|gene_name=citrate synthase like; small muscle protein, X-linked
 |gene_source=MGI:1913356 MGI:1919082
 |gene_symbol=Csl Smpx
@@ Line 25: / Line 26: @@
 |nearest_promoter_id=NM_027945.3
 |nearest_refseq=
+|nearest_transcripts=AK161295:155 BC050750:163
 |nearest_unigene=NM_027945
 |peak_score=1