TSS: Rfhg 100390.1: Difference between revisions

Latest revision as of 11:14, 13 March 2025

Basic information about the TSS

TSS ID:	rfhg_100390.1
Species:	human
Chr:	chr7

Start:	134127334
End:	134127369
Strand:	+

Source datasets

FANTOM5|EPD

Protocol

CAGE|TSS_database

TSS cluster detected^*

2

* The number of TSS cluster called data-sets (maximum 17)

cCREs annotation

Description:	PLS,CTCF-bound (EH38D4034150,EH38E2592599)
Category:	PLS

* cCREs are candidates for cis regulatory elements generated from the subset of representative DNase hypersensitivity sites supported by either histone modifications or CTCF-binding data. Find more details here.

Gene and protein annotation

Nearest transcript id and distance:	ENST00000473068.1:0 AK057348:0
GeneID:	136332
HGNC/MGI_ID:	HGNC:21964
UniProt_ID:
Nearer transcript ids and distances:	ENST00000645682.1:-35 ENST00000285928.2:-35 BC104899:-35 BC104897:-35 view more...

Gene_name:	leucine rich repeats and guanylate kinase domain containing
Gene_symbol:	LRGUK
Gene_synonyms:	CFAP246 FLJ32786
Gene_source:	HGNC:21964

TATA-Box annotation

Distance to TSS:	11
Nearest PromoterID:	NM_001365701
Entrez ID:	136332
Nearest Unigene:	Hs.149774
Nearest Refseq:	NM_144648
Nearest Ensembl:	ENSG00000155530
Gene Name:	leucine rich repeats and guanylate kinase domain containing
Gene Alias:	CFAP246
Gene Type:	protein-coding
CpG%:	0.028571
GC%:	0.555556
TATA-Box(TBP)/Promoter/Homer Distance From Peak(sequence,strand,conservation):

TSS expression

Expression data not found.

@@ Line 16: / Line 16: @@
 |gene_description=leucine rich repeats and guanylate kinase domain containing
 |gene_id=136332
-|gene_name=LRGUK
+|gene_name=leucine rich repeats and guanylate kinase domain containing
 |gene_source=HGNC:21964
 |gene_symbol=LRGUK
@@ Line 35: / Line 35: @@
 |strand=+
 |tata_box=
-|transcript_name=ENST00000473068.1 NM_001401519.1 NM_001365701.3 NM_001365700.3 NM_144648.3 NR_174939.1 AK057348 KJ904989
+|transcript_name=ENST00000473068.1 AK057348
 |tss_cluster_detected=2
 |tss_id=rfhg_100390.1