TSS: Rfhg 100600.1: Difference between revisions

From referenceTSS
Jump to: navigation, search
No edit summary
No edit summary
 
Line 16: Line 16:
|gene_description=myotrophin
|gene_description=myotrophin
|gene_id=136319 767558
|gene_id=136319 767558
|gene_name=MTPN
|gene_name=leucine zipper protein 6; myotrophin
|gene_source=HGNC:15667 HGNC:33955
|gene_source=HGNC:15667 HGNC:33955
|gene_symbol=LUZP6 MTPN
|gene_symbol=LUZP6 MTPN
Line 35: Line 35:
|strand=-
|strand=-
|tata_box=
|tata_box=
|transcript_name=ENST00000393085.4 ENST00000435723.1 NM_145808.4 AL834231 AK056225 AK309816 AF106075 BC028093
|transcript_name=ENST00000393085.4 ENST00000435723.1 AL834231 AK056225 AK309816 AF106075 BC028093
|tss_cluster_detected=14
|tss_cluster_detected=14
|tss_id=rfhg_100600.1
|tss_id=rfhg_100600.1

Latest revision as of 11:18, 13 March 2025

Basic information about the TSS

TSS ID:rfhg_100600.1
TSS ID(Version3):hg_86381.1
hg_86382.1
Species:human
Chr:chr7
Start:135977274
End:135977378
Strand:-
Source datasetsFANTOM5|EPD|ENCODE|PRJNA548673|PRJNA401781|PRJNA615891
|PRJNA4843412|DRA013844|PRJNA597322|PRJDB5282
ProtocolCAGE|TSS_database|RAMPAGE|oligo_capping|SLIC_CAGE|NETCAGE
|STRIPE-seq|ReCappable-seq|C1CAGE|TIF-seq2
TSS cluster detected*14

  * The number of TSS cluster called data-sets (maximum 17)


cCREs annotation

Description:PLS,CTCF-bound (EH38D4035864,EH38E2593850)
Category:PLS

  * cCREs are candidates for cis regulatory elements generated from the subset of representative DNase hypersensitivity sites supported by either histone modifications or CTCF-binding data. Find more details here.



Gene and protein annotation

Nearest transcript id and distance:ENST00000393085.4:0
ENST00000435723.1:0
AL834231:0
AK056225:0
AK309816:0
AF106075:0
BC028093:0
GeneID:136319 767558
HGNC/MGI_ID:HGNC:15667 HGNC:33955
UniProt_ID:C9JL85 Q69YG1
Nearer transcript ids and distances:
  • KJ895512:174
  • AB489167:174
  • AM393216:174
  • AM393266:174
view more...
Gene_name:leucine zipper protein 6; myotrophin
Gene_symbol:LUZP6 MTPN
Gene_synonyms:GCDP MPD6 MTPNUT MYOTROPHIN V-1
Gene_source:HGNC:15667 HGNC:33955



TATA-Box annotation

Distance to TSS:33
Nearest PromoterID:NM_145808
Entrez ID:136319
Nearest Unigene:Hs.602015
Nearest Refseq:NM_145808
Nearest Ensembl:ENSG00000105887
Gene Name:leucine zipper protein 6; myotrophin
Gene Alias:GCDP|V-1
Gene Type:protein-coding
CpG%:0.067308
GC%:0.619048
TATA-Box(TBP)/Promoter/Homer Distance From Peak(sequence,strand,conservation):



TSS expression

Expression data not found.
Retrieved from "https://reftss.riken.jp/reftss/index.php?title=TSS:Rfhg_100600.1&oldid=3570133"