TSS: Rfhg 115207.1: Difference between revisions

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|gene_description=long intergenic non-protein coding RNA 1410
|gene_description=long intergenic non-protein coding RNA 1410
|gene_id=107987020
|gene_id=107987020
|gene_name=LINC01410
|gene_name=uncharacterized LOC107987020
|gene_source=EntrezGene:107987020
|gene_source=EntrezGene:107987020
|gene_symbol=LOC107987020
|gene_symbol=LOC107987020
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|strand=-
|strand=-
|tata_box=
|tata_box=
|transcript_name=ENST00000665642.1 BC065527
|transcript_name=BC065527
|tss_cluster_detected=4
|tss_cluster_detected=4
|tss_id=rfhg_115207.1
|tss_id=rfhg_115207.1

Latest revision as of 15:48, 13 March 2025

Basic information about the TSS


TSS ID:rfhg_115207.1
TSS ID(Version3):hg_100792.1
hg_100793.1
Species:human
Chr:chr9
Start:62802627
End:62802713
Strand:-
Source datasetsFANTOM5|DRA000914|PRJNA4843412|DRA013844
ProtocolCAGE|NETCAGE
TSS cluster detected*4

  * The number of TSS cluster called data-sets (maximum 17)


cCREs annotation


Description:PLS,CTCF-bound (EH38D4191591,EH38E2694363)
Category:PLS

  * cCREs are candidates for cis regulatory elements generated from the subset of representative DNase hypersensitivity sites supported by either histone modifications or CTCF-binding data. Find more details here.



Gene and protein annotation


Nearest transcript id and distance:BC065527:0
GeneID:107987020
HGNC/MGI_ID:
UniProt_ID:
Nearer transcript ids and distances:
  • BC011779:-1
  • ENST00000365604.1:189
view more...
Gene_name:uncharacterized LOC107987020
Gene_symbol:LOC107987020
Gene_synonyms:
Gene_source:EntrezGene:107987020



TATA-Box annotation


Distance to TSS:1205
Nearest PromoterID:NR_121647
Entrez ID:103352539
Nearest Unigene:Hs.351215
Nearest Refseq:NR_121647
Nearest Ensembl:ENSG00000238113
Gene Name:uncharacterized LOC107987020
Gene Alias:-
Gene Type:ncRNA
CpG%:0.081395
GC%:0.747126
TATA-Box(TBP)/Promoter/Homer Distance From Peak(sequence,strand,conservation):



TSS expression

Expression data not found.