TSS: Mm 161979.1: Difference between revisions
From referenceTSS
(Created page with "{{TSSDetail |all_trans=ENSMUST00000072915.2:-4 NM_008023:-4 uc008gxc.1:-4 X92591:-4 BC139476:21 BC139477:21 BC115976:116 |chr=chr19 |cpg_percent=0.035 |distance=-4 |distance_t...") |
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{{TSSDetail | {{TSSDetail | ||
|all_trans= | |all_trans=MGI:1347468 | ||
|chr=chr19 | |chr=chr19 | ||
|cpg_percent=0.035 | |cpg_percent=0.035 | ||
| Line 6: | Line 6: | ||
|distance_to_tss=4 | |distance_to_tss=4 | ||
|end=16873826 | |end=16873826 | ||
|end_of_center_position=16873826 | |||
|entrez_id=14240 | |entrez_id=14240 | ||
|gc_percent=0.58209 | |gc_percent=0.58209 | ||
| Line 21: | Line 22: | ||
|nearest_refseq=NM_008023 | |nearest_refseq=NM_008023 | ||
|nearest_unigene=Mm.7971 | |nearest_unigene=Mm.7971 | ||
|num_trans= | |num_trans=14240 | ||
|species=mouse | |species=mouse | ||
|start=16873825 | |start=16873825 | ||
|start_of_center_position=16873825 | |||
|strand=- | |strand=- | ||
|tata_box= | |tata_box=-18(GCTCAAAAAGCC,+,0.00) | ||
|transcript_name= | |transcript_name=X92591 | ||
|tss_classification=yes | |tss_classification=yes | ||
|tss_id=mm_161979.1 | |tss_id=mm_161979.1 | ||
|tss_score=1 | |tss_score=1 | ||
|uniprot_id= | |uniprot_id=Q64733 | ||
}} | }} | ||
Latest revision as of 09:12, 27 July 2021
Basic information about the TSS
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| TSS cluster detected* |
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* The number of TSS cluster called studies (maximum 5)
Gene and protein annotation
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TATA-Box annotation
| Distance to TSS: | 4 |
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| Nearest PromoterID: | NM_008023 |
| Entrez ID: | 14240 |
| Nearest Unigene: | Mm.7971 |
| Nearest Refseq: | NM_008023 |
| Nearest Ensembl: | ENSMUSG00000056829 |
| Gene Name: | forkhead box B2 |
| Gene Alias: | Fkh4 |
| Gene Description: | forkhead box B2 |
| Gene Type: | protein-coding |
| CpG%: | 0.035 |
| GC%: | 0.58209 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): | -18(GCTCAAAAAGCC,+,0.00) |
TSS expression
Expression data not found.