TSS: Rfhg 134769.1: Difference between revisions

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|gene_description=potassium voltage-gated channel subfamily C member 1
|gene_description=potassium voltage-gated channel subfamily C member 1
|gene_id=3746
|gene_id=3746
|gene_name=KCNC1
|gene_name=potassium voltage-gated channel subfamily C member 1
|gene_source=HGNC:6233
|gene_source=HGNC:6233
|gene_symbol=KCNC1
|gene_symbol=KCNC1
Line 35: Line 35:
|strand=+
|strand=+
|tata_box=
|tata_box=
|transcript_name=ENST00000379472.4 ENST00000675775.1 ENST00000265969.8 ENST00000640909.2 ENST00000640318.2 ENST00000639325.2 NM_001112741.2
|transcript_name=ENST00000379472.4 ENST00000675775.1 ENST00000265969.8 ENST00000640909.2 ENST00000640318.2 ENST00000639325.2
|tss_cluster_detected=1
|tss_cluster_detected=1
|tss_id=rfhg_134769.1
|tss_id=rfhg_134769.1

Latest revision as of 21:52, 13 March 2025

Basic information about the TSS

TSS ID:rfhg_134769.1
Species:human
Chr:chr11
Start:17734733
End:17734820
Strand:+
Source datasetsFANTOM5
ProtocolCAGE
TSS cluster detected*1

  * The number of TSS cluster called data-sets (maximum 17)


cCREs annotation

Description:PLS,CTCF-bound (EH38D2428625,EH38E1524863)
Category:PLS

  * cCREs are candidates for cis regulatory elements generated from the subset of representative DNase hypersensitivity sites supported by either histone modifications or CTCF-binding data. Find more details here.



Gene and protein annotation

Nearest transcript id and distance:ENST00000379472.4:0
ENST00000675775.1:0
ENST00000265969.8:0
ENST00000640909.2:0
ENST00000640318.2:0
ENST00000639325.2:0
GeneID:3746
HGNC/MGI_ID:HGNC:6233
UniProt_ID:A0A1W2PNZ3 A0A1W2PPX0 A0A6Q8PHL6 P48547
Nearer transcript ids and distances:
    Gene_name:potassium voltage-gated channel subfamily C member 1
    Gene_symbol:KCNC1
    Gene_synonyms:Kv3.1
    Gene_source:HGNC:6233



    TATA-Box annotation

    Distance to TSS:-1172
    Nearest PromoterID:NM_004976
    Entrez ID:3746
    Nearest Unigene:Hs.552896
    Nearest Refseq:NM_004976
    Nearest Ensembl:ENSG00000129159
    Gene Name:potassium voltage-gated channel subfamily C member 1
    Gene Alias:EPM7|KV3.1|KV4|NGK2
    Gene Type:protein-coding
    CpG%:0.206897
    GC%:0.784091
    TATA-Box(TBP)/Promoter/Homer Distance From Peak(sequence,strand,conservation):



    TSS expression

    Expression data not found.
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