TSS: Rfhg 13543.1: Difference between revisions

Latest revision as of 22:06, 13 March 2025

Basic information about the TSS

TSS ID:	rfhg_13543.1
Species:	human
Chr:	chr1

Start:	155254978
End:	155254988
Strand:	-

Source datasets

FANTOM5

Protocol

CAGE

TSS cluster detected^*

1

* The number of TSS cluster called data-sets (maximum 17)

cCREs annotation

Description:	PLS,CTCF-bound (EH38D2225528,EH38E1387029)
Category:	PLS

* cCREs are candidates for cis regulatory elements generated from the subset of representative DNase hypersensitivity sites supported by either histone modifications or CTCF-binding data. Find more details here.

Gene and protein annotation

Nearest transcript id and distance:	ENST00000368368.7:10
GeneID:	10712
HGNC/MGI_ID:	HGNC:1233
UniProt_ID:	P81408
Nearer transcript ids and distances:	BC033707:11 ENST00000472550.5:14 BC006493:15 BC007444:15 ENST00000350210.6:18 BC040136:18 ENST00000491082.1:70 CU679147:99 KJ902145:99 KJ906055:99 KJ893117:99 KJ906054:99 CU691816:99 EU446765:100 AB587342:100 ENST00000487649.5:-203 BC017262:-203 BC008854:-359 BC010471:-399 ENST00000361361.7:-495 ENST00000621094.4:-495 ENST00000481822.1:-495 NM_006589.3:-495 NM_001267608.2:-495 NM_198264.2:-495 AK093335:-495 view more...

Gene_name:	endosomal transmembrane epsin interactor 3
Gene_symbol:	ENTREP3
Gene_synonyms:	cote1
Gene_source:	HGNC:1233

TATA-Box annotation

Distance to TSS:	500
Nearest PromoterID:	NM_198264
Entrez ID:	10712
Nearest Unigene:	Hs.348308
Nearest Refseq:	NM_006589
Nearest Ensembl:	ENSG00000160767
Gene Name:	endosomal transmembrane epsin interactor 3
Gene Alias:	C1orf2\|COTE1
Gene Type:	protein-coding
CpG%:	0.100000
GC%:	0.636364
TATA-Box(TBP)/Promoter/Homer Distance From Peak(sequence,strand,conservation):

TSS expression

Expression data not found.

Property "Nearest transcripts" (as page type) with input value "BC033707:11 ENST00000472550.5:14 BC006493:15 BC007444:15 ENST00000350210.6:18 BC040136:18 ENST00000491082.1:70 CU679147:99 KJ902145:99 KJ906055:99 KJ893117:99 KJ906054:99 CU691816:99 EU446765:100 AB587342:100 ENST00000487649.5:-203 BC017262:-203 BC008854:-359 BC010471:-399 ENST00000361361.7:-495 ENST00000621094.4:-495 ENST00000481822.1:-495 NM_006589.3:-495 NM_001267608.2:-495 NM_198264.2:-495 AK093335:-495" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.

@@ Line 16: / Line 16: @@
 |gene_description=family with sequence similarity 189 member B
 |gene_id=10712
-|gene_name=FAM189B
+|gene_name=endosomal transmembrane epsin interactor 3
 |gene_source=HGNC:1233
 |gene_symbol=ENTREP3