TSS: Rfhg 136564.1: Difference between revisions
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|gene_description=chromosome 11 open reading frame 49 | |gene_description=chromosome 11 open reading frame 49 | ||
|gene_id=79096 | |gene_id=79096 | ||
|gene_name= | |gene_name=centriolar satellite-associated tubulin polyglutamylase complex regulator 1 | ||
|gene_source=HGNC:28720 | |gene_source=HGNC:28720 | ||
|gene_symbol=CSTPP1 | |gene_symbol=CSTPP1 | ||
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|strand=+ | |strand=+ | ||
|tata_box= | |tata_box= | ||
|transcript_name=AB528079 AM393584 AM393807 CU679361 | |transcript_name=AB528079 AM393584 AM393807 CU679361 CU680726 CR457351 | ||
|tss_cluster_detected=1 | |tss_cluster_detected=1 | ||
|tss_id=rfhg_136564.1 | |tss_id=rfhg_136564.1 | ||
Latest revision as of 22:28, 13 March 2025
Basic information about the TSS
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| Source datasets | FANTOM5 | |||||||||||||
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| Protocol | CAGE | |||||||||||||
| TSS cluster detected* | 1 | |||||||||||||
* The number of TSS cluster called data-sets (maximum 17)
cCREs annotation
| Description: | PLS,CTCF-bound (EH38D2449795,EH38E1537826) |
|---|---|
| Category: | PLS |
* cCREs are candidates for cis regulatory elements generated from the subset of representative DNase hypersensitivity sites supported by either histone modifications or CTCF-binding data. Find more details here.
Gene and protein annotation
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TATA-Box annotation
| Distance to TSS: | 39 |
|---|---|
| Nearest PromoterID: | NR_103471 |
| Entrez ID: | 79096 |
| Nearest Unigene: | Hs.368296 |
| Nearest Refseq: | NM_024113 |
| Nearest Ensembl: | ENSG00000149179 |
| Gene Name: | centriolar satellite-associated tubulin polyglutamylase complex regulator 1 |
| Gene Alias: | - |
| Gene Type: | protein-coding |
| CpG%: | 0.100000 |
| GC%: | 0.636364 |
| TATA-Box(TBP)/Promoter/Homer Distance From Peak(sequence,strand,conservation): |
TSS expression
Property "Nearest transcripts" (as page type) with input value "ENST00000527667.5:-15 ENST00000527784.5:-15 AK293609:-15 AK025863:-15 ENST00000526424.5:-16 ENST00000525895.5:-16 AK300813:-16 ENST00000532633.5:-17 ENST00000378615.7:-17 BC013988:-17 BC052291:-19 AL136575:-25 ENST00000395460.6:-27 BC009455:-27 ENST00000278460.12:-34 NM_024113.5:-34 NM_001003677.3:-34 NM_001003676.3:-34 NM_001003678.3:-34 NR_103472.2:-34 NR_103471.2:-34 ENST00000532840.5:-35 ENST00000378618.6:-41 ENST00000531648.5:-47 ENST00000527234.5:-47 ENST00000522712.6:-50 BC001860:-52 AK315639:-54 ENST00000525279.5:-65 ENST00000528488.5:-98 AK316318:-98 ENST00000533124.5:-106 NM_001278222.1:-106" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.