TSS: Rfhg 159882.1: Difference between revisions
From referenceTSS
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|gene_description=mitochondrial ribosomal protein S31 | |gene_description=mitochondrial ribosomal protein S31 | ||
|gene_id=10240 | |gene_id=10240 | ||
|gene_name= | |gene_name=mitochondrial ribosomal protein S31 | ||
|gene_source=HGNC:16632 | |gene_source=HGNC:16632 | ||
|gene_symbol=MRPS31 | |gene_symbol=MRPS31 | ||
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|strand=- | |strand=- | ||
|tata_box= | |tata_box= | ||
|transcript_name=ENST00000323563.8 | |transcript_name=ENST00000323563.8 BC022045 AK315248 BC010159 | ||
|tss_cluster_detected=11 | |tss_cluster_detected=11 | ||
|tss_id=rfhg_159882.1 | |tss_id=rfhg_159882.1 | ||
Latest revision as of 05:57, 14 March 2025
Basic information about the TSS
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| Source datasets | PRJNA615891|PRJNA401781|PRJNA548673|PRJNA4843412|DRA013844 |PRJNA597322|PRJDB5282 | |||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Protocol | TIF-seq2|oligo_capping|CAGE|ReCappable-seq|SLIC_CAGE |RAMPAGE|NETCAGE|STRIPE-seq|C1CAGE | |||||||||||||
| TSS cluster detected* | 11 | |||||||||||||
* The number of TSS cluster called data-sets (maximum 17)
cCREs annotation
| Description: | PLS,CTCF-bound (EH38D2645404,EH38E1670384) |
|---|---|
| Category: | PLS |
* cCREs are candidates for cis regulatory elements generated from the subset of representative DNase hypersensitivity sites supported by either histone modifications or CTCF-binding data. Find more details here.
Gene and protein annotation
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TATA-Box annotation
| Distance to TSS: | 12 |
|---|---|
| Nearest PromoterID: | NM_005830 |
| Entrez ID: | 10240 |
| Nearest Unigene: | Hs.596607 |
| Nearest Refseq: | NM_005830 |
| Nearest Ensembl: | ENSG00000102738 |
| Gene Name: | mitochondrial ribosomal protein S31 |
| Gene Alias: | IMOGN38|MRP-S31|S31mt |
| Gene Type: | protein-coding |
| CpG%: | 0.069444 |
| GC%: | 0.547945 |
| TATA-Box(TBP)/Promoter/Homer Distance From Peak(sequence,strand,conservation): |
TSS expression
Expression data not found.