TSS: Rfhg 194007.1: Difference between revisions

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|gene_description=vacuolar protein sorting 25 homolog
|gene_description=vacuolar protein sorting 25 homolog
|gene_id=84313
|gene_id=84313
|gene_name=VPS25
|gene_name=vacuolar protein sorting 25 homolog
|gene_source=HGNC:28122
|gene_source=HGNC:28122
|gene_symbol=VPS25
|gene_symbol=VPS25
Line 35: Line 35:
|strand=+
|strand=+
|tata_box=
|tata_box=
|transcript_name=ENST00000253794.7 ENST00000591584.1 ENST00000589219.1 ENST00000589577.1 NM_032353.4 BC006282 AK312092 CU675329 AB014763
|transcript_name=ENST00000253794.7 ENST00000591584.1 ENST00000589219.1 ENST00000589577.1 BC006282 AK312092 CU675329 AB014763
|tss_cluster_detected=15
|tss_cluster_detected=15
|tss_id=rfhg_194007.1
|tss_id=rfhg_194007.1

Latest revision as of 16:34, 14 March 2025

Basic information about the TSS

TSS ID:rfhg_194007.1
TSS ID(Version3):hg_160994.1
Species:human
Chr:chr17
Start:42773427
End:42773478
Strand:+
Source datasetsFANTOM5|EPD|DRA000914|ENCODE|PRJDB5282|PRJNA401781
|PRJNA615891|PRJNA548673|PRJNA4843412|DRA013844|PRJNA597322
ProtocolCAGE|TSS_database|C1CAGE|RAMPAGE|oligo_capping|SLIC_CAGE
|TIF-seq2|NETCAGE|ReCappable-seq|STRIPE-seq
TSS cluster detected*15

  * The number of TSS cluster called data-sets (maximum 17)


cCREs annotation

Description:PLS,CTCF-bound (EH38D2933010,EH38E1863852)
Category:PLS

  * cCREs are candidates for cis regulatory elements generated from the subset of representative DNase hypersensitivity sites supported by either histone modifications or CTCF-binding data. Find more details here.



Gene and protein annotation

Nearest transcript id and distance:ENST00000253794.7:0
ENST00000591584.1:0
ENST00000589219.1:0
ENST00000589577.1:0
BC006282:0
AK312092:0
CU675329:0
AB014763:0
GeneID:84313
HGNC/MGI_ID:HGNC:28122
UniProt_ID:A0A024R1X3 K7EP45
Nearer transcript ids and distances:
  • HQ448303:1
  • KJ894979:1
  • ENST00000590339.5:2
  • ENST00000589520.1:30
view more...
Gene_name:vacuolar protein sorting 25 homolog
Gene_symbol:VPS25
Gene_synonyms:DERP9 EAP20 MGC10540
Gene_source:HGNC:28122



TATA-Box annotation

Distance to TSS:3
Nearest PromoterID:NM_032353
Entrez ID:84313
Nearest Unigene:Hs.500165
Nearest Refseq:NM_032353
Nearest Ensembl:ENSG00000131475
Gene Name:vacuolar protein sorting 25 homolog
Gene Alias:DERP9|EAP20|FAP20
Gene Type:protein-coding
CpG%:0.078431
GC%:0.596154
TATA-Box(TBP)/Promoter/Homer Distance From Peak(sequence,strand,conservation):



TSS expression

Expression data not found.
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