TSS: Rfhg 214625.1: Difference between revisions

Latest revision as of 23:09, 14 March 2025

Basic information about the TSS

TSS ID:	rfhg_214625.1
Species:	human
Chr:	chr19

Start:	49057731
End:	49057754
Strand:	-

Source datasets

FANTOM5|EPD

Protocol

CAGE|TSS_database

TSS cluster detected^*

2

* The number of TSS cluster called data-sets (maximum 17)

cCREs annotation

Description:	PLS,CTCF-bound (EH38D3069936,EH38E1960550)
Category:	PLS

* cCREs are candidates for cis regulatory elements generated from the subset of representative DNase hypersensitivity sites supported by either histone modifications or CTCF-binding data. Find more details here.

Gene and protein annotation

Nearest transcript id and distance:	ENST00000684222.1:0 ENST00000596965.5:0 AK092722:0 AK310581:0
GeneID:	94027
HGNC/MGI_ID:	HGNC:16451
UniProt_ID:	A0A0F7RQF0
Nearer transcript ids and distances:

Gene_name:	chorionic gonadotropin subunit beta 7
Gene_symbol:	CGB7
Gene_synonyms:	CG-beta-a
Gene_source:	HGNC:16451

TATA-Box annotation

Distance to TSS:	-2002
Nearest PromoterID:	NM_033142
Entrez ID:	94027
Nearest Unigene:	Hs.681647
Nearest Refseq:	NM_033142
Nearest Ensembl:	ENSG00000196337
Gene Name:	chorionic gonadotropin subunit beta 7
Gene Alias:	CG-beta-a\|CGB6
Gene Type:	protein-coding
CpG%:	0.043478
GC%:	0.666667
TATA-Box(TBP)/Promoter/Homer Distance From Peak(sequence,strand,conservation):

TSS expression

Expression data not found.

@@ Line 16: / Line 16: @@
 |gene_description=chorionic gonadotropin subunit beta 7
 |gene_id=94027
-|gene_name=CGB7
+|gene_name=chorionic gonadotropin subunit beta 7
 |gene_source=HGNC:16451
 |gene_symbol=CGB7
@@ Line 35: / Line 35: @@
 |strand=-
 |tata_box=
-|transcript_name=ENST00000684222.1 ENST00000596965.5 ENST00000593309.1 NM_001385261.1 NM_033142.2 AK092722 AK310581
+|transcript_name=ENST00000684222.1 ENST00000596965.5 AK092722 AK310581
 |tss_cluster_detected=2
 |tss_id=rfhg_214625.1