TSS: Rfhg 216504.1: Difference between revisions

Latest revision as of 23:45, 14 March 2025

Basic information about the TSS

TSS ID:	rfhg_216504.1
Species:	human
Chr:	chr19

Start:	55634987
End:	55635054
Strand:	+

Source datasets

PRJNA4843412|DRA013844

Protocol

NETCAGE|CAGE

TSS cluster detected^*

2

* The number of TSS cluster called data-sets (maximum 17)

cCREs annotation

Description:	pELS,CTCF-bound (EH38D3075719,EH38E1965074)
Category:	pELS

* cCREs are candidates for cis regulatory elements generated from the subset of representative DNase hypersensitivity sites supported by either histone modifications or CTCF-binding data. Find more details here.

Gene and protein annotation

Nearest transcript id and distance:	ENST00000592881.1:0 AK055093:0
GeneID:	51157 51545
HGNC/MGI_ID:	HGNC:25017 HGNC:29473
UniProt_ID:	K7ERU0
Nearer transcript ids and distances:	ENST00000587252.5:405 BC071620:405 view more...

Gene_name:	zinc finger protein 580; zinc finger protein 581
Gene_symbol:	ZNF580 ZNF581
Gene_synonyms:	FLJ22550 HSPC189
Gene_source:	HGNC:25017 HGNC:29473

TATA-Box annotation

Distance to TSS:	-5982
Nearest PromoterID:	NM_207115
Entrez ID:	51157
Nearest Unigene:	Hs.631551
Nearest Refseq:	NM_016202
Nearest Ensembl:	ENSG00000213015
Gene Name:	zinc finger protein 580; zinc finger protein 581
Gene Alias:	-
Gene Type:	protein-coding
CpG%:	0.119403
GC%:	0.617647
TATA-Box(TBP)/Promoter/Homer Distance From Peak(sequence,strand,conservation):

TSS expression

Expression data not found.

@@ Line 16: / Line 16: @@
 |gene_description=zinc finger protein 580
 |gene_id=51157 51545
-|gene_name=ZNF580
+|gene_name=zinc finger protein 580; zinc finger protein 581
 |gene_source=HGNC:25017 HGNC:29473
 |gene_symbol=ZNF580 ZNF581
@@ Line 35: / Line 35: @@
 |strand=+
 |tata_box=
-|transcript_name=ENST00000592881.1 NR_171683.1 NR_171682.1 AK055093
+|transcript_name=ENST00000592881.1 AK055093
 |tss_cluster_detected=2
 |tss_id=rfhg_216504.1