TSS: Rfhg 4559.1: Difference between revisions

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|gene_description=collagen type XVI alpha 1 chain
|gene_description=collagen type XVI alpha 1 chain
|gene_id=
|gene_id=
|gene_name=COL16A1
|gene_name=
|gene_source=
|gene_source=
|gene_symbol=
|gene_symbol=

Latest revision as of 13:43, 15 March 2025

Basic information about the TSS


TSS ID:rfhg_4559.1
Species:human
Chr:chr1
Start:31696270
End:31696301
Strand:-
Source datasetsFANTOM5
ProtocolCAGE
TSS cluster detected*1

  * The number of TSS cluster called data-sets (maximum 17)


cCREs annotation


Description:dELS (EH38D2147309,EH38E1334406)
Category:dELS

  * cCREs are candidates for cis regulatory elements generated from the subset of representative DNase hypersensitivity sites supported by either histone modifications or CTCF-binding data. Find more details here.



Gene and protein annotation


Nearest transcript id and distance:
GeneID:
HGNC/MGI_ID:
UniProt_ID:
Nearer transcript ids and distances:
    Gene_name:
    Gene_symbol:
    Gene_synonyms:
    Gene_source:



    TATA-Box annotation


    Distance to TSS:7732
    Nearest PromoterID:NM_001856
    Entrez ID:1307
    Nearest Unigene:Hs.368921
    Nearest Refseq:NM_001856
    Nearest Ensembl:ENSG00000084636
    Gene Name:
    Gene Alias:447AA|FP1572
    Gene Type:protein-coding
    CpG%:0.000000
    GC%:0.687500
    TATA-Box(TBP)/Promoter/Homer Distance From Peak(sequence,strand,conservation):