TSS: Rfhg 51437.1: Difference between revisions

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|gene_description=TM4SF1 antisense RNA 1
|gene_description=TM4SF1 antisense RNA 1
|gene_id=4071
|gene_id=4071
|gene_name=TM4SF1-AS1
|gene_name=transmembrane 4 L six family member 1
|gene_source=HGNC:11853
|gene_source=HGNC:11853
|gene_symbol=TM4SF1
|gene_symbol=TM4SF1

Latest revision as of 15:34, 15 March 2025

Basic information about the TSS


TSS ID:rfhg_51437.1
Species:human
Chr:chr3
Start:149377724
End:149377724
Strand:-
Source datasetsPRJNA615891
ProtocolTIF-seq2
TSS cluster detected*1

  * The number of TSS cluster called data-sets (maximum 17)


cCREs annotation


Description:PLS,CTCF-bound (EH38D3499237,EH38E2247169)
Category:PLS

  * cCREs are candidates for cis regulatory elements generated from the subset of representative DNase hypersensitivity sites supported by either histone modifications or CTCF-binding data. Find more details here.



Gene and protein annotation


Nearest transcript id and distance:BC034145:-18
GeneID:4071
HGNC/MGI_ID:HGNC:11853
UniProt_ID:Q8NE91
Nearer transcript ids and distances:
  • AK130073:31
  • ENST00000493348.1:32
  • AK130271:-35
  • ENST00000305366.8:75
  • ENST00000493298.1:75
  • NM_014220.3:75
  • BC008442:76
  • LF351597:108
  • MA587174:108
  • M90657:115
  • BC010166:127
  • CU679647:176
  • CR456953:177
  • MB471893:-240
view more...
Gene_name:transmembrane 4 L six family member 1
Gene_symbol:TM4SF1
Gene_synonyms:L6
Gene_source:HGNC:11853



TATA-Box annotation


Distance to TSS:-54
Nearest PromoterID:NR_109809
Entrez ID:100874091
Nearest Unigene:Hs.549633
Nearest Refseq:NR_046650
Nearest Ensembl:ENSG00000240541
Gene Name:transmembrane 4 L six family member 1
Gene Alias:-
Gene Type:ncRNA
CpG%:0.000000
GC%:1.000000
TATA-Box(TBP)/Promoter/Homer Distance From Peak(sequence,strand,conservation):



TSS expression

Expression data not found.