TSS: Rfhg 77869.1: Difference between revisions
From referenceTSS
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|gene_description=synaptonemal complex protein 2 like | |gene_description=synaptonemal complex protein 2 like | ||
|gene_id=221711 | |gene_id=221711 | ||
|gene_name= | |gene_name=synaptonemal complex protein 2 like | ||
|gene_source=HGNC:21537 | |gene_source=HGNC:21537 | ||
|gene_symbol=SYCP2L | |gene_symbol=SYCP2L | ||
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|strand=+ | |strand=+ | ||
|tata_box= | |tata_box= | ||
|transcript_name=ENST00000283141.11 | |transcript_name=ENST00000283141.11 | ||
|tss_cluster_detected=5 | |tss_cluster_detected=5 | ||
|tss_id=rfhg_77869.1 | |tss_id=rfhg_77869.1 | ||
Latest revision as of 23:55, 15 March 2025
Basic information about the TSS
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| Source datasets | PRJNA597322|PRJNA401781|PRJNA548673 | |||||||||||||
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| Protocol | STRIPE-seq|CAGE|RAMPAGE|oligo_capping | |||||||||||||
| TSS cluster detected* | 5 | |||||||||||||
* The number of TSS cluster called data-sets (maximum 17)
cCREs annotation
| Description: | PLS,CTCF-bound (EH38D3812392,EH38E2445406) |
|---|---|
| Category: | PLS |
* cCREs are candidates for cis regulatory elements generated from the subset of representative DNase hypersensitivity sites supported by either histone modifications or CTCF-binding data. Find more details here.
Gene and protein annotation
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TATA-Box annotation
| Distance to TSS: | 14 |
|---|---|
| Nearest PromoterID: | NM_001040274 |
| Entrez ID: | 221711 |
| Nearest Unigene: | Hs.729128 |
| Nearest Refseq: | NM_194299 |
| Nearest Ensembl: | ENSG00000153157 |
| Gene Name: | synaptonemal complex protein 2 like |
| Gene Alias: | C6orf177|NO145|dJ62D2.1 |
| Gene Type: | protein-coding |
| CpG%: | 0.105263 |
| GC%: | 0.706897 |
| TATA-Box(TBP)/Promoter/Homer Distance From Peak(sequence,strand,conservation): |
TSS expression
Expression data not found.