TSS: Hg 102857.1: Difference between revisions
From referenceTSS
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{{TSSDetail | {{TSSDetail | ||
|GRF2= | |||
|chr=chr9 | |||
|cpg_percent=0.005 | |cpg_percent=0.005 | ||
|distance=NA | |||
|distance_to_tss=53464 | |distance_to_tss=53464 | ||
|end=131656385 | |||
|end_of_center_position=131656378 | |||
|entrez_id=2889 | |entrez_id=2889 | ||
|gc_percent=0.497512 | |gc_percent=0.497512 | ||
|gene_alias=C3G | |gene_alias=C3G{{!}}GRF2 | ||
|gene_description=Rap guanine nucleotide exchange factor 1 | |gene_description=Rap guanine nucleotide exchange factor 1 | ||
|gene_name=RAPGEF1 | |gene_name=RAPGEF1 | ||
Line 12: | Line 17: | ||
|nearest_refseq=NM_005312 | |nearest_refseq=NM_005312 | ||
|nearest_unigene=Hs.127897 | |nearest_unigene=Hs.127897 | ||
|tata_box= | |num_trans=0 | ||
|species=human | |||
|start=131656370 | |||
|start_of_center_position=131656377 | |||
|strand=- | |||
|tata_box=-29(TCTTTTAGGGAC,+,0.00) | |||
|transcript_name= | |||
|tss_classification=no | |||
|tss_id=hg_102857.1 | |tss_id=hg_102857.1 | ||
|tss_score=1 | |||
}} | }} |
Latest revision as of 17:13, 15 June 2021
Basic information about the TSS
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TSS cluster detected* |
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* The number of TSS cluster called studies (maximum 16)
Gene and protein annotation
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TATA-Box annotation
Distance to TSS: | 53464 |
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Nearest PromoterID: | NM_198679 |
Entrez ID: | 2889 |
Nearest Unigene: | Hs.127897 |
Nearest Refseq: | NM_005312 |
Nearest Ensembl: | ENSG00000107263 |
Gene Name: | RAPGEF1 |
Gene Alias: | C3G|GRF2 |
Gene Description: | Rap guanine nucleotide exchange factor 1 |
Gene Type: | protein-coding |
CpG%: | 0.005 |
GC%: | 0.497512 |
TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): | -29(TCTTTTAGGGAC,+,0.00) |