TSS: Mm 31699.1: Difference between revisions
From referenceTSS
(Created page with "{{TSSDetail |all_trans=ENSMUST00000062145.1:-250 NM_177607:-250 uc008tfc.1:-250 uc012dft.1:-250 BC116650:-250 AK077205:-250 |chr=chr4 |cpg_percent=0.04 |distance=-250 |distanc...") |
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{{TSSDetail | {{TSSDetail | ||
|all_trans= | |all_trans=MGI:3045314 | ||
|chr=chr4 | |chr=chr4 | ||
|cpg_percent=0.04 | |cpg_percent=0.04 | ||
|distance=-250 | |distance=-250 | ||
|distance_to_tss= | |distance_to_tss=-23 | ||
|end=62525622 | |end=62525622 | ||
|end_of_center_position=62525621 | |||
|entrez_id=214106 | |entrez_id=214106 | ||
|gc_percent=0.393035 | |gc_percent=0.393035 | ||
| Line 18: | Line 19: | ||
|hgnc_mgi_id=MGI:3045314 | |hgnc_mgi_id=MGI:3045314 | ||
|nearest_ensembl=ENSMUSG00000058046 | |nearest_ensembl=ENSMUSG00000058046 | ||
|nearest_promoter_id= | |nearest_promoter_id=NM_001356421 | ||
|nearest_refseq=NM_177607 | |nearest_refseq=NM_177607 | ||
|nearest_unigene=Mm.73212 | |nearest_unigene=Mm.73212 | ||
|num_trans= | |num_trans=214106 | ||
|species=mouse | |species=mouse | ||
|start=62525618 | |start=62525618 | ||
|start_of_center_position=62525620 | |||
|strand=+ | |strand=+ | ||
|transcript_name=ENSMUST00000062145 | |transcript_name=ENSMUST00000062145.1 BC116650 AK077205 | ||
|tss_classification=yes | |tss_classification=yes | ||
|tss_id=mm_31699.1 | |tss_id=mm_31699.1 | ||
|tss_score=1 | |tss_score=1 | ||
|uniprot_id= | |uniprot_id= | ||
}} | }} | ||
Latest revision as of 18:34, 27 July 2021
Basic information about the TSS
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| TSS cluster detected* |
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* The number of TSS cluster called studies (maximum 5)
Gene and protein annotation
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TATA-Box annotation
| Distance to TSS: | -23 |
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| Nearest PromoterID: | NM_001356421 |
| Entrez ID: | 214106 |
| Nearest Unigene: | Mm.73212 |
| Nearest Refseq: | NM_177607 |
| Nearest Ensembl: | ENSMUSG00000058046 |
| Gene Name: | RIKEN cDNA 4933430I17 gene |
| Gene Alias: | bN189G18.7 |
| Gene Description: | RIKEN cDNA 4933430I17 gene |
| Gene Type: | protein-coding |
| CpG%: | 0.04 |
| GC%: | 0.393035 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
TSS expression
Expression data not found.