TSS: Hg 100090.1: Difference between revisions
From referenceTSS
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{{TSSDetail | {{TSSDetail | ||
|bA536D16.1= | |||
|bA778P13.1= | |||
|chr=chr9 | |||
|cpg_percent=0.005 | |cpg_percent=0.005 | ||
|distance_to_tss= | |distance=NA | ||
|distance_to_tss=133243 | |||
|end=15697224 | |||
|end_of_center_position=15697221 | |||
|entrez_id=203238 | |entrez_id=203238 | ||
|gc_percent=0.447761 | |gc_percent=0.447761 | ||
|gene_alias=C9orf93 | |gene_alias=C9orf93{{!}}bA536D16.1{{!}}bA778P13.1 | ||
|gene_description=coiled-coil domain containing 171 | |gene_description=coiled-coil domain containing 171 | ||
|gene_name=CCDC171 | |gene_name=CCDC171 | ||
|gene_type=protein-coding | |gene_type=protein-coding | ||
|nearest_ensembl=ENSG00000164989 | |nearest_ensembl=ENSG00000164989 | ||
|nearest_promoter_id= | |nearest_promoter_id=NM_001355547 | ||
|nearest_refseq=NM_173550 | |nearest_refseq=NM_173550 | ||
|nearest_unigene=Hs.17267 | |nearest_unigene=Hs.17267 | ||
|tata_box= | |num_trans=0 | ||
|species=human | |||
|start=15697217 | |||
|start_of_center_position=15697220 | |||
|strand=- | |||
|tata_box=-88(TAGCTTAAAAGG,-,0.00),-86(GCTTAAAAGGTC,+,0.00) | |||
|transcript_name= | |||
|tss_classification=no | |||
|tss_id=hg_100090.1 | |tss_id=hg_100090.1 | ||
|tss_score=1 | |||
}} | }} |
Latest revision as of 16:10, 15 June 2021
Basic information about the TSS
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TSS cluster detected* |
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* The number of TSS cluster called studies (maximum 16)
Gene and protein annotation
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TATA-Box annotation
Distance to TSS: | 133243 |
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Nearest PromoterID: | NM_001355547 |
Entrez ID: | 203238 |
Nearest Unigene: | Hs.17267 |
Nearest Refseq: | NM_173550 |
Nearest Ensembl: | ENSG00000164989 |
Gene Name: | CCDC171 |
Gene Alias: | C9orf93|bA536D16.1|bA778P13.1 |
Gene Description: | coiled-coil domain containing 171 |
Gene Type: | protein-coding |
CpG%: | 0.005 |
GC%: | 0.447761 |
TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): | -88(TAGCTTAAAAGG,-,0.00),-86(GCTTAAAAGGTC,+,0.00) |