TSS: Hg 100097.1: Difference between revisions
From referenceTSS
(Created page with "{{TSSDetail |cpg_percent=0.005 |distance_to_tss=-201062 |entrez_id=100129385 |gc_percent=0.308458 |gene_alias=Em:AL513424.1 |gene_description=chromosome 9 open reading frame 9...") |
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{{TSSDetail | {{TSSDetail | ||
|chr=chr9 | |||
|cpg_percent=0.005 | |cpg_percent=0.005 | ||
|distance=NA | |||
|distance_to_tss=-201062 | |distance_to_tss=-201062 | ||
|end=16477377 | |||
|end_of_center_position=16477375 | |||
|entrez_id=100129385 | |entrez_id=100129385 | ||
|gc_percent=0.308458 | |gc_percent=0.308458 | ||
| Line 9: | Line 13: | ||
|gene_type=protein-coding | |gene_type=protein-coding | ||
|nearest_ensembl=ENSG00000205549 | |nearest_ensembl=ENSG00000205549 | ||
|nearest_promoter_id= | |nearest_promoter_id=NM_001364979 | ||
|nearest_refseq=NM_001271829 | |nearest_refseq=NM_001271829 | ||
|nearest_unigene=Hs.586441 | |nearest_unigene=Hs.586441 | ||
|tata_box= | |num_trans=0 | ||
|species=human | |||
|start=16477372 | |||
|start_of_center_position=16477374 | |||
|strand=- | |||
|tata_box=33(TTCTTTAAAAGC,-,0.00),34(TCTTTAAAAGCC,+,0.00) | |||
|transcript_name= | |||
|tss_classification=no | |||
|tss_id=hg_100097.1 | |tss_id=hg_100097.1 | ||
|tss_score=1 | |||
}} | }} | ||
Latest revision as of 17:29, 11 June 2021
Basic information about the TSS
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| TSS cluster detected* |
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* The number of TSS cluster called studies (maximum 16)
Gene and protein annotation
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TATA-Box annotation
| Distance to TSS: | -201062 |
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| Nearest PromoterID: | NM_001364979 |
| Entrez ID: | 100129385 |
| Nearest Unigene: | Hs.586441 |
| Nearest Refseq: | NM_001271829 |
| Nearest Ensembl: | ENSG00000205549 |
| Gene Name: | C9orf92 |
| Gene Alias: | Em:AL513424.1 |
| Gene Description: | chromosome 9 open reading frame 92 |
| Gene Type: | protein-coding |
| CpG%: | 0.005 |
| GC%: | 0.308458 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): | 33(TTCTTTAAAAGC,-,0.00),34(TCTTTAAAAGCC,+,0.00) |