TSS: Mm 49108.1: Difference between revisions
From referenceTSS
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{{TSSDetail | {{TSSDetail | ||
|all_trans= | |OTTMUSG00000029336= | ||
|all_trans=MGI:3840148 MGI:5753638 | |||
|chr=chr6 | |chr=chr6 | ||
|cpg_percent=0.095 | |cpg_percent=0.095 | ||
| Line 6: | Line 7: | ||
|distance_to_tss=132 | |distance_to_tss=132 | ||
|end=8259460 | |end=8259460 | ||
|end_of_center_position=8259420 | |||
|entrez_id=100036521 | |entrez_id=100036521 | ||
|gc_percent=0.681592 | |gc_percent=0.681592 | ||
|gene_alias=Gm16039 | |gene_alias=Gm16039 | ||
|gene_description=UMAP1-MVP12 associated (UMA) domain containing 1 | |gene_description=UMAP1-MVP12 associated (UMA) domain containing 1 | ||
|gene_id=100036521 | |gene_id=100036521 | ||
|gene_name=UMAP1-MVP12 associated (UMA) domain containing 1 | |gene_name=UMAP1-MVP12 associated (UMA) domain containing 1; predicted gene 45062 | ||
|gene_source=MGI:3840148 | |gene_source=MGI:3840148 MGI:5753638 | ||
|gene_symbol=Umad1 | |gene_symbol=Gm45062 Umad1 | ||
|gene_synonyms=Gm16039 | |gene_synonyms=Gm16039 | ||
|gene_type=protein-coding | |gene_type=protein-coding | ||
|hgnc_mgi_id=MGI:3840148 | |hgnc_mgi_id=MGI:3840148 MGI:5753638 | ||
|nearest_ensembl=ENSMUSG00000089862 | |nearest_ensembl=ENSMUSG00000089862 | ||
|nearest_promoter_id= | |nearest_promoter_id=NM_001302354 | ||
|nearest_refseq=NM_001302353 | |nearest_refseq=NM_001302353 | ||
|nearest_unigene=Mm.446106 | |nearest_unigene=Mm.446106 | ||
|num_trans= | |num_trans=100036521 | ||
|species=mouse | |species=mouse | ||
|start=8259379 | |start=8259379 | ||
|start_of_center_position=8259419 | |||
|strand=+ | |strand=+ | ||
|transcript_name=ENSMUST00000162034.7 ENSMUST00000160705.7 ENSMUST00000159433.7 ENSMUST00000161400.1 ENSMUST00000162564.6 AK009885 | |transcript_name=ENSMUST00000162034.7 ENSMUST00000160705.7 ENSMUST00000159433.7 ENSMUST00000161400.1 ENSMUST00000162564.6 AK009885 | ||
|tss_classification=yes | |tss_classification=yes | ||
|tss_id=mm_49108.1 | |tss_id=mm_49108.1 | ||
Latest revision as of 00:58, 28 July 2021
Basic information about the TSS
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| TSS cluster detected* |
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* The number of TSS cluster called studies (maximum 5)
Gene and protein annotation
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TATA-Box annotation
| Distance to TSS: | 132 |
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| Nearest PromoterID: | NM_001302354 |
| Entrez ID: | 100036521 |
| Nearest Unigene: | Mm.446106 |
| Nearest Refseq: | NM_001302353 |
| Nearest Ensembl: | ENSMUSG00000089862 |
| Gene Name: | UMAP1-MVP12 associated (UMA) domain containing 1; predicted gene 45062 |
| Gene Alias: | Gm16039 |
| Gene Description: | UMAP1-MVP12 associated (UMA) domain containing 1 |
| Gene Type: | protein-coding |
| CpG%: | 0.095 |
| GC%: | 0.681592 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
TSS expression
Expression data not found.