TSS: Mm 49951.1: Difference between revisions
From referenceTSS
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{{TSSDetail | {{TSSDetail | ||
|all_trans= | |G630031O20Rik= | ||
|MtSSB= | |||
|all_trans=MGI:1920040 | |||
|chr=chr6 | |chr=chr6 | ||
|cpg_percent=0.115 | |cpg_percent=0.115 | ||
| Line 6: | Line 8: | ||
|distance_to_tss=21 | |distance_to_tss=21 | ||
|end=40471511 | |end=40471511 | ||
|end_of_center_position=40471437 | |||
|entrez_id=381760 | |entrez_id=381760 | ||
|gc_percent=0.646766 | |gc_percent=0.646766 | ||
|gene_alias=2810480P10Rik | |gene_alias=2810480P10Rik{{!}}G630031O20Rik{{!}}MtSSB{{!}}mtDBP | ||
|gene_description=single-stranded DNA binding protein 1 | |gene_description=single-stranded DNA binding protein 1 | ||
|gene_id=381760 | |gene_id=381760 | ||
| Line 17: | Line 20: | ||
|gene_type=protein-coding | |gene_type=protein-coding | ||
|hgnc_mgi_id=MGI:1920040 | |hgnc_mgi_id=MGI:1920040 | ||
|mtDBP= | |||
|nearest_ensembl=ENSMUSG00000029911 | |nearest_ensembl=ENSMUSG00000029911 | ||
|nearest_promoter_id=NM_028358 | |nearest_promoter_id=NM_028358 | ||
|nearest_refseq=NM_028358 | |nearest_refseq=NM_028358 | ||
|nearest_unigene=Mm.276356 | |nearest_unigene=Mm.276356 | ||
|num_trans= | |num_trans=381760 | ||
|species=mouse | |species=mouse | ||
|start=40471361 | |start=40471361 | ||
|start_of_center_position=40471436 | |||
|strand=+ | |strand=+ | ||
|transcript_name=ENSMUST00000031971.12 ENSMUST00000201570.1 ENSMUST00000121360.7 ENSMUST00000117411.7 | |transcript_name=ENSMUST00000031971.12 ENSMUST00000201570.1 ENSMUST00000121360.7 ENSMUST00000117411.7 AK013425 BC028648 BC061183 AK090242 AK090272 BC060290 AK160556 | ||
|tss_classification=yes | |tss_classification=yes | ||
|tss_id=mm_49951.1 | |tss_id=mm_49951.1 | ||
Latest revision as of 01:16, 28 July 2021
Basic information about the TSS
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| TSS cluster detected* |
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* The number of TSS cluster called studies (maximum 5)
Gene and protein annotation
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TATA-Box annotation
| Distance to TSS: | 21 |
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| Nearest PromoterID: | NM_028358 |
| Entrez ID: | 381760 |
| Nearest Unigene: | Mm.276356 |
| Nearest Refseq: | NM_028358 |
| Nearest Ensembl: | ENSMUSG00000029911 |
| Gene Name: | single-stranded DNA binding protein 1 |
| Gene Alias: | 2810480P10Rik|G630031O20Rik|MtSSB|mtDBP |
| Gene Description: | single-stranded DNA binding protein 1 |
| Gene Type: | protein-coding |
| CpG%: | 0.115 |
| GC%: | 0.646766 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
TSS expression
Expression data not found.