TSS: Mm 6030.1: Difference between revisions
From referenceTSS
(Created page with "{{TSSDetail |all_trans=ENSMUST00000186973.1:0 AK007236:0 |chr=chr1 |cpg_percent=0.005 |distance=0 |distance_to_tss=20949 |end=59537231 |entrez_id=381260 |gc_percent=0.482587 |...") |
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{{TSSDetail | {{TSSDetail | ||
|all_trans= | |all_trans=MGI:1923911 | ||
|chr=chr1 | |chr=chr1 | ||
|cpg_percent=0.005 | |cpg_percent=0.005 | ||
|distance=0 | |distance=0 | ||
|distance_to_tss= | |distance_to_tss=12919 | ||
|end=59537231 | |end=59537231 | ||
|end_of_center_position=59537214 | |||
|entrez_id=381260 | |entrez_id=381260 | ||
|gc_percent=0.482587 | |gc_percent=0.482587 | ||
| Line 18: | Line 19: | ||
|hgnc_mgi_id=MGI:1923911 | |hgnc_mgi_id=MGI:1923911 | ||
|nearest_ensembl=ENSMUSG00000047361 | |nearest_ensembl=ENSMUSG00000047361 | ||
|nearest_promoter_id= | |nearest_promoter_id=NM_001357842 | ||
|nearest_refseq=NM_001013771 | |nearest_refseq=NM_001013771 | ||
|nearest_unigene=Mm.486706 | |nearest_unigene=Mm.486706 | ||
|num_trans= | |num_trans=76661 | ||
|species=mouse | |species=mouse | ||
|start=59537195 | |start=59537195 | ||
|start_of_center_position=59537213 | |||
|strand=- | |strand=- | ||
|transcript_name=ENSMUST00000186973.1 AK007236 | |transcript_name=ENSMUST00000186973.1 AK007236 | ||
Latest revision as of 05:07, 28 July 2021
Basic information about the TSS
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| TSS cluster detected* |
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* The number of TSS cluster called studies (maximum 5)
Gene and protein annotation
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TATA-Box annotation
| Distance to TSS: | 12919 |
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| Nearest PromoterID: | NM_001357842 |
| Entrez ID: | 381260 |
| Nearest Unigene: | Mm.486706 |
| Nearest Refseq: | NM_001013771 |
| Nearest Ensembl: | ENSMUSG00000047361 |
| Gene Name: | RIKEN cDNA 1700122D07 gene |
| Gene Alias: | AW554518 |
| Gene Description: | predicted gene 973 |
| Gene Type: | protein-coding |
| CpG%: | 0.005 |
| GC%: | 0.482587 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
TSS expression
Expression data not found.