TSS: Mm 66782.1: Difference between revisions
From referenceTSS
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{{TSSDetail | {{TSSDetail | ||
|all_trans= | |all_trans=MGI:2142361 | ||
|chr=chr7 | |chr=chr7 | ||
|cpg_percent=0.015 | |cpg_percent=0.015 | ||
| Line 6: | Line 6: | ||
|distance_to_tss=3 | |distance_to_tss=3 | ||
|end=46975913 | |end=46975913 | ||
|end_of_center_position=46975909 | |||
|entrez_id=97402 | |entrez_id=97402 | ||
|gc_percent=0.432836 | |gc_percent=0.432836 | ||
| Line 14: | Line 15: | ||
|gene_source=MGI:2142361 | |gene_source=MGI:2142361 | ||
|gene_symbol=C86187 | |gene_symbol=C86187 | ||
|gene_synonyms= | |gene_synonyms=Sirena1 | ||
|gene_type=ncRNA | |gene_type=ncRNA | ||
|hgnc_mgi_id=MGI:2142361 | |hgnc_mgi_id=MGI:2142361 | ||
| Line 21: | Line 22: | ||
|nearest_refseq=NR_015609 | |nearest_refseq=NR_015609 | ||
|nearest_unigene=Mm.22314 | |nearest_unigene=Mm.22314 | ||
|num_trans= | |num_trans=97402 | ||
|species=mouse | |species=mouse | ||
|start=46975903 | |start=46975903 | ||
|start_of_center_position=46975908 | |||
|strand=- | |strand=- | ||
|tata_box= | |tata_box=-79(ACCCTTTAAAGG,-,0.00),-78(CCCTTTAAAGGG,+,0.00),-78(CCCTTTAAAGGG,-,0.00),-77(CCTTTAAAGGGC,+,0.00),-76(CTTTAAAGGGCC,+,0.00) | ||
|transcript_name= | |transcript_name=ENSMUST00000209497.1 ENSMUST00000210486.1 AK135845 AK135966 AK163234 AK135809 AK139730 AK162109 | ||
|tss_classification=no | |tss_classification=no | ||
|tss_id=mm_66782.1 | |tss_id=mm_66782.1 | ||
Latest revision as of 07:32, 28 July 2021
Basic information about the TSS
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| TSS cluster detected* |
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* The number of TSS cluster called studies (maximum 5)
Gene and protein annotation
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TATA-Box annotation
| Distance to TSS: | 3 |
|---|---|
| Nearest PromoterID: | NR_015609 |
| Entrez ID: | 97402 |
| Nearest Unigene: | Mm.22314 |
| Nearest Refseq: | NR_015609 |
| Nearest Ensembl: | ENSMUSG00000110001 |
| Gene Name: | expressed sequence C86187 |
| Gene Alias: | - |
| Gene Description: | expressed sequence C86187 |
| Gene Type: | ncRNA |
| CpG%: | 0.015 |
| GC%: | 0.432836 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): | -79(ACCCTTTAAAGG,-,0.00),-78(CCCTTTAAAGGG,+,0.00),-78(CCCTTTAAAGGG,-,0.00),-77(CCTTTAAAGGGC,+,0.00),-76(CTTTAAAGGGCC,+,0.00) |
TSS expression
Expression data not found.