TSS: Mm 77599.1: Difference between revisions
From referenceTSS
(Created page with "{{TSSDetail |chr=chr8 |cpg_percent=0.05 |distance= |distance_to_tss=2090 |end=123892744 |entrez_id=11459 |gc_percent=0.60199 |gene_alias=AA959943|Acta-2|Acts|Actsk-1 |gene_des...") |
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{{TSSDetail | {{TSSDetail | ||
|Acta-2= | |||
|Acts= | |||
|Actsk-1= | |||
|chr=chr8 | |chr=chr8 | ||
|cpg_percent=0.05 | |cpg_percent=0.05 | ||
|distance= | |distance=NA | ||
|distance_to_tss=2090 | |distance_to_tss=2090 | ||
|end=123892744 | |end=123892744 | ||
|end_of_center_position=123892686 | |||
|entrez_id=11459 | |entrez_id=11459 | ||
|gc_percent=0.60199 | |gc_percent=0.60199 | ||
|gene_alias=AA959943 | |gene_alias=AA959943{{!}}Acta-2{{!}}Acts{{!}}Actsk-1 | ||
|gene_description= | |gene_description=actin, alpha 1, skeletal muscle | ||
|gene_name=Acta1 | |gene_name=Acta1 | ||
|gene_type=protein-coding | |gene_type=protein-coding | ||
|nearest_ensembl=ENSMUSG00000031972 | |nearest_ensembl=ENSMUSG00000031972 | ||
|nearest_promoter_id= | |nearest_promoter_id=NM_009606 | ||
|nearest_refseq=NM_009606 | |nearest_refseq=NM_009606 | ||
|nearest_unigene=Mm.214950 | |nearest_unigene=Mm.214950 | ||
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|species=mouse | |species=mouse | ||
|start=123892626 | |start=123892626 | ||
|start_of_center_position=123892685 | |||
|strand=- | |strand=- | ||
|transcript_name= | |transcript_name= | ||
Latest revision as of 19:40, 21 June 2021
Basic information about the TSS
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| TSS cluster detected* |
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* The number of TSS cluster called studies (maximum 5)
Gene and protein annotation
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TATA-Box annotation
| Distance to TSS: | 2090 |
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| Nearest PromoterID: | NM_009606 |
| Entrez ID: | 11459 |
| Nearest Unigene: | Mm.214950 |
| Nearest Refseq: | NM_009606 |
| Nearest Ensembl: | ENSMUSG00000031972 |
| Gene Name: | Acta1 |
| Gene Alias: | AA959943|Acta-2|Acts|Actsk-1 |
| Gene Description: | actin, alpha 1, skeletal muscle |
| Gene Type: | protein-coding |
| CpG%: | 0.05 |
| GC%: | 0.60199 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |