TSS: Mm 79878.1: Difference between revisions
From referenceTSS
(Created page with "{{TSSDetail |chr=chr9 |cpg_percent=0.015 |distance= |distance_to_tss=-6138 |end=65208557 |entrez_id=214424 |gc_percent=0.542289 |gene_alias=ARTD15|BC055447|C79952|PARP-16 |gen...") |
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{{TSSDetail | {{TSSDetail | ||
|BC055447= | |||
|C79952= | |||
|PARP-16= | |||
|chr=chr9 | |chr=chr9 | ||
|cpg_percent=0.015 | |cpg_percent=0.015 | ||
|distance= | |distance=NA | ||
|distance_to_tss=-6138 | |distance_to_tss=-6138 | ||
|end=65208557 | |end=65208557 | ||
|end_of_center_position=65208553 | |||
|entrez_id=214424 | |entrez_id=214424 | ||
|gc_percent=0.542289 | |gc_percent=0.542289 | ||
|gene_alias=ARTD15 | |gene_alias=ARTD15{{!}}BC055447{{!}}C79952{{!}}PARP-16 | ||
|gene_description= | |gene_description=poly (ADP-ribose) polymerase family, member 16 | ||
|gene_name=Parp16 | |gene_name=Parp16 | ||
|gene_type=protein-coding | |gene_type=protein-coding | ||
| Line 18: | Line 22: | ||
|species=mouse | |species=mouse | ||
|start=65208547 | |start=65208547 | ||
|start_of_center_position=65208552 | |||
|strand=+ | |strand=+ | ||
|tata_box= | |tata_box=-35(CACTATAAGAGG,-,0.00) | ||
|transcript_name= | |transcript_name= | ||
|tss_classification= | |tss_classification=yes | ||
|tss_id=mm_79878.1 | |tss_id=mm_79878.1 | ||
|tss_score=1 | |tss_score=1 | ||
}} | }} | ||
Latest revision as of 07:32, 18 July 2021
Basic information about the TSS
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| TSS cluster detected* |
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* The number of TSS cluster called studies (maximum 5)
Gene and protein annotation
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TATA-Box annotation
| Distance to TSS: | -6138 |
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| Nearest PromoterID: | NM_177460 |
| Entrez ID: | 214424 |
| Nearest Unigene: | Mm.31129 |
| Nearest Refseq: | NM_177460 |
| Nearest Ensembl: | ENSMUSG00000032392 |
| Gene Name: | Parp16 |
| Gene Alias: | ARTD15|BC055447|C79952|PARP-16 |
| Gene Description: | poly (ADP-ribose) polymerase family, member 16 |
| Gene Type: | protein-coding |
| CpG%: | 0.015 |
| GC%: | 0.542289 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): | -35(CACTATAAGAGG,-,0.00) |