TSS: Mm 79998.1: Difference between revisions
From referenceTSS
(Created page with "{{TSSDetail |chr=chr9 |cpg_percent=0 |distance= |distance_to_tss=2141 |end=67041731 |entrez_id=22003 |gc_percent=0.39801 |gene_alias=AA986836|AI854628|TM2|Tm3|Tmpa|Tpm-1|alpha...") |
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{{TSSDetail | {{TSSDetail | ||
|AI854628= | |||
|TM2= | |||
|Tm3= | |||
|Tmpa= | |||
|Tpm-1= | |||
|alpha-TM= | |||
|chr=chr9 | |chr=chr9 | ||
|cpg_percent=0 | |cpg_percent=0 | ||
|distance= | |distance=NA | ||
|distance_to_tss=2141 | |distance_to_tss=2141 | ||
|end=67041731 | |end=67041731 | ||
|end_of_center_position=67041730 | |||
|entrez_id=22003 | |entrez_id=22003 | ||
|gc_percent=0.39801 | |gc_percent=0.39801 | ||
|gene_alias=AA986836 | |gene_alias=AA986836{{!}}AI854628{{!}}TM2{{!}}TPM1kappa{{!}}Tm3{{!}}Tmpa{{!}}Tpm-1{{!}}alpha-TM | ||
|gene_description= | |gene_description=tropomyosin 1, alpha | ||
|gene_name=Tpm1 | |gene_name=Tpm1 | ||
|gene_type=protein-coding | |gene_type=protein-coding | ||
|nearest_ensembl=ENSMUSG00000032366 | |nearest_ensembl=ENSMUSG00000032366 | ||
|nearest_promoter_id= | |nearest_promoter_id=NM_001164256 | ||
|nearest_refseq=NM_024427 | |nearest_refseq=NM_024427 | ||
|nearest_unigene=Mm.121878 | |nearest_unigene=Mm.121878 | ||
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|species=mouse | |species=mouse | ||
|start=67041728 | |start=67041728 | ||
|start_of_center_position=67041729 | |||
|strand=+ | |strand=+ | ||
|transcript_name= | |transcript_name= | ||
Latest revision as of 20:33, 21 June 2021
Basic information about the TSS
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| TSS cluster detected* |
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* The number of TSS cluster called studies (maximum 5)
Gene and protein annotation
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TATA-Box annotation
| Distance to TSS: | 2141 |
|---|---|
| Nearest PromoterID: | NM_001164256 |
| Entrez ID: | 22003 |
| Nearest Unigene: | Mm.121878 |
| Nearest Refseq: | NM_024427 |
| Nearest Ensembl: | ENSMUSG00000032366 |
| Gene Name: | Tpm1 |
| Gene Alias: | AA986836|AI854628|TM2|TPM1kappa|Tm3|Tmpa|Tpm-1|alpha-TM |
| Gene Description: | tropomyosin 1, alpha |
| Gene Type: | protein-coding |
| CpG%: | 0 |
| GC%: | 0.39801 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |