TSS: Mm 82607.1: Difference between revisions
From referenceTSS
(Created page with "{{TSSDetail |all_trans=ENSMUST00000034698.7:0 NM_010744:0 uc009olp.1:0 uc012gpg.1:0 uc009olq.1:0 AK166092:0 AK133513:0 BC016568:0 AK160525:0 BC006715:4 U41805:20 BC138499:-29...") |
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{{TSSDetail | {{TSSDetail | ||
|all_trans= | |Ly84l= | ||
|St2l= | |||
|all_trans=MGI:106201 | |||
|chr=chr9 | |chr=chr9 | ||
|cpg_percent=0.075 | |cpg_percent=0.075 | ||
| Line 6: | Line 8: | ||
|distance_to_tss=42 | |distance_to_tss=42 | ||
|end=21510203 | |end=21510203 | ||
|end_of_center_position=21510193 | |||
|entrez_id=17083 | |entrez_id=17083 | ||
|gc_percent=0.631841 | |gc_percent=0.631841 | ||
|gene_alias=Il1rl1l | |gene_alias=Il1rl1l{{!}}Ly84l{{!}}St2l | ||
|gene_description=transmembrane p24 trafficking protein 1 | |gene_description=transmembrane p24 trafficking protein 1 | ||
|gene_id=17083 | |gene_id=17083 | ||
|gene_name=transmembrane | |gene_name=transmembrane p24 trafficking protein 1 | ||
|gene_source=MGI:106201 | |gene_source=MGI:106201 | ||
|gene_symbol=Tmed1 | |gene_symbol=Tmed1 | ||
| Line 21: | Line 24: | ||
|nearest_refseq=NM_010744 | |nearest_refseq=NM_010744 | ||
|nearest_unigene=Mm.196618 | |nearest_unigene=Mm.196618 | ||
|num_trans= | |num_trans=17083 | ||
|species=mouse | |species=mouse | ||
|start=21510181 | |start=21510181 | ||
|start_of_center_position=21510192 | |||
|strand=- | |strand=- | ||
|tata_box= | |tata_box=-26(ATCCTTAAAGGG,-,0.00),-24(CCTTAAAGGGTC,+,0.00) | ||
|transcript_name= | |transcript_name=ENSMUST00000213316.1 ENSMUST00000214285.1 AK166092 AK133513 BC016568 AK160525 | ||
|tss_classification=yes | |tss_classification=yes | ||
|tss_id=mm_82607.1 | |tss_id=mm_82607.1 | ||
|tss_score=1 | |tss_score=1 | ||
|uniprot_id= | |uniprot_id=A0A1L1SU69 | ||
}} | }} | ||
Latest revision as of 13:17, 28 July 2021
Basic information about the TSS
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| TSS cluster detected* |
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* The number of TSS cluster called studies (maximum 5)
Gene and protein annotation
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TATA-Box annotation
| Distance to TSS: | 42 |
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| Nearest PromoterID: | NR_136912 |
| Entrez ID: | 17083 |
| Nearest Unigene: | Mm.196618 |
| Nearest Refseq: | NM_010744 |
| Nearest Ensembl: | ENSMUSG00000032180 |
| Gene Name: | transmembrane p24 trafficking protein 1 |
| Gene Alias: | Il1rl1l|Ly84l|St2l |
| Gene Description: | transmembrane p24 trafficking protein 1 |
| Gene Type: | protein-coding |
| CpG%: | 0.075 |
| GC%: | 0.631841 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): | -26(ATCCTTAAAGGG,-,0.00),-24(CCTTAAAGGGTC,+,0.00) |
TSS expression
Expression data not found.