TSS: Mm 86091.1: Difference between revisions
From referenceTSS
(Created page with "{{TSSDetail |all_trans=ENSMUST00000053150.6:0 uc033jnn.1:33 |chr=chr9 |cpg_percent=0.035 |distance=0 |distance_to_tss=-48754 |end=114982742 |entrez_id=333433 |gc_percent=0.497...") |
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{{TSSDetail | {{TSSDetail | ||
|all_trans= | |D9Ertd660e= | ||
|all_trans=MGI:3704345 | |||
|chr=chr9 | |chr=chr9 | ||
|cpg_percent=0.035 | |cpg_percent=0.035 | ||
|distance= | |distance=1 | ||
|distance_to_tss= | |distance_to_tss=4256 | ||
|end=114982742 | |end=114982742 | ||
|entrez_id= | |end_of_center_position=114982741 | ||
|entrez_id=74486 | |||
|gc_percent=0.497512 | |gc_percent=0.497512 | ||
|gene_alias= | |gene_alias=4933433D06Rik{{!}}C820004B04Rik{{!}}OPR-10{{!}}ORP-10 | ||
|gene_description= | |gene_description=oxysterol binding protein-like 10 | ||
|gene_id=100043813 | |gene_id=100043813 | ||
|gene_name= | |gene_name=ribosomal protein S27, retrogene | ||
|gene_source=MGI:3704345 | |gene_source=MGI:3704345 | ||
|gene_symbol=Rps27rt | |gene_symbol=Rps27rt | ||
| Line 17: | Line 19: | ||
|gene_type=protein-coding | |gene_type=protein-coding | ||
|hgnc_mgi_id=MGI:3704345 | |hgnc_mgi_id=MGI:3704345 | ||
|nearest_ensembl= | |nearest_ensembl=ENSMUSG00000040875 | ||
|nearest_promoter_id= | |nearest_promoter_id=NM_148958 | ||
|nearest_refseq= | |nearest_refseq=NM_148958 | ||
|nearest_unigene=Mm. | |nearest_unigene=Mm.458474 | ||
|num_trans= | |num_trans=100043813 | ||
|species=mouse | |species=mouse | ||
|start=114982739 | |start=114982739 | ||
|start_of_center_position=114982740 | |||
|strand=- | |strand=- | ||
|transcript_name=ENSMUST00000053150. | |transcript_name=ENSMUST00000053150.7 | ||
|tss_classification=no | |tss_classification=no | ||
|tss_id=mm_86091.1 | |tss_id=mm_86091.1 | ||
Latest revision as of 14:34, 28 July 2021
Basic information about the TSS
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| TSS cluster detected* |
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* The number of TSS cluster called studies (maximum 5)
Gene and protein annotation
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TATA-Box annotation
| Distance to TSS: | 4256 |
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| Nearest PromoterID: | NM_148958 |
| Entrez ID: | 74486 |
| Nearest Unigene: | Mm.458474 |
| Nearest Refseq: | NM_148958 |
| Nearest Ensembl: | ENSMUSG00000040875 |
| Gene Name: | ribosomal protein S27, retrogene |
| Gene Alias: | 4933433D06Rik|C820004B04Rik|OPR-10|ORP-10 |
| Gene Description: | oxysterol binding protein-like 10 |
| Gene Type: | protein-coding |
| CpG%: | 0.035 |
| GC%: | 0.497512 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
TSS expression
Expression data not found.