TSS: Mm 97101.1: Difference between revisions
From referenceTSS
(Created page with "{{TSSDetail |all_trans=ENSMUST00000092926.10:0 ENSMUST00000117445.1:0 NM_001045531:0 uc007kan.1:0 uc011xys.1:0 AK133348:0 BC147586:11 BC147607:11 |chr=chr11 |cpg_percent=0.07...") |
No edit summary |
||
| (2 intermediate revisions by the same user not shown) | |||
| Line 1: | Line 1: | ||
{{TSSDetail | {{TSSDetail | ||
|all_trans= | |all_trans=MGI:2685728 MGI:6121532 | ||
|chr=chr11 | |chr=chr11 | ||
|cpg_percent=0.07 | |cpg_percent=0.07 | ||
| Line 6: | Line 6: | ||
|distance_to_tss=-3 | |distance_to_tss=-3 | ||
|end=73329748 | |end=73329748 | ||
|end_of_center_position=73329738 | |||
|entrez_id=380709 | |entrez_id=380709 | ||
|gc_percent=0.597015 | |gc_percent=0.597015 | ||
| Line 11: | Line 12: | ||
|gene_description=spermatogenesis associated 22 | |gene_description=spermatogenesis associated 22 | ||
|gene_id=380709 | |gene_id=380709 | ||
|gene_name=spermatogenesis associated 22 | |gene_name=predicted gene, 49340; spermatogenesis associated 22 | ||
|gene_source=MGI:2685728 | |gene_source=MGI:2685728 MGI:6121532 | ||
|gene_symbol=Spata22 | |gene_symbol=Gm49340 Spata22 | ||
|gene_synonyms=LOC380709 | |gene_synonyms=LOC380709 | ||
|gene_type=protein-coding | |gene_type=protein-coding | ||
|hgnc_mgi_id=MGI:2685728 | |hgnc_mgi_id=MGI:2685728 MGI:6121532 | ||
|nearest_ensembl= | |nearest_ensembl=ENSMUSG00000112920 | ||
|nearest_promoter_id=NM_001045531 | |nearest_promoter_id=NM_001045531 | ||
|nearest_refseq=NM_001045531 | |nearest_refseq=NM_001045531 | ||
|nearest_unigene=Mm.340910 | |nearest_unigene=Mm.340910 | ||
|num_trans= | |num_trans=380709 | ||
|species=mouse | |species=mouse | ||
|start=73329727 | |start=73329727 | ||
|start_of_center_position=73329737 | |||
|strand=+ | |strand=+ | ||
|transcript_name=ENSMUST00000092926.10 ENSMUST00000117445.1 | |transcript_name=ENSMUST00000092926.10 ENSMUST00000117445.1 | ||
|tss_classification=yes | |tss_classification=yes | ||
|tss_id=mm_97101.1 | |tss_id=mm_97101.1 | ||
Latest revision as of 18:34, 28 July 2021
Basic information about the TSS
|
| |||||||||||||
| TSS cluster detected* |
|---|
* The number of TSS cluster called studies (maximum 5)
Gene and protein annotation
|
|
TATA-Box annotation
| Distance to TSS: | -3 |
|---|---|
| Nearest PromoterID: | NM_001045531 |
| Entrez ID: | 380709 |
| Nearest Unigene: | Mm.340910 |
| Nearest Refseq: | NM_001045531 |
| Nearest Ensembl: | ENSMUSG00000112920 |
| Gene Name: | predicted gene, 49340; spermatogenesis associated 22 |
| Gene Alias: | Gm882 |
| Gene Description: | spermatogenesis associated 22 |
| Gene Type: | protein-coding |
| CpG%: | 0.07 |
| GC%: | 0.597015 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
TSS expression
Expression data not found.