TSS: Hg 100210.1: Difference between revisions
From referenceTSS
(Created page with "{{TSSDetail |cpg_percent=0.005 |distance_to_tss=-113 |entrez_id=3453 |gc_percent=0.40796 |gene_alias=IFNAP22 |gene_description="interferon alpha 22, pseudogene" |gene_name=IFN...") |
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{{TSSDetail | {{TSSDetail | ||
|all_trans=HGNC:5431 | |||
|chr=chr9 | |||
|cpg_percent=0.005 | |cpg_percent=0.005 | ||
|distance=45 | |||
|distance_to_tss=-113 | |distance_to_tss=-113 | ||
|end=21278689 | |||
|end_of_center_position=21278677 | |||
|entrez_id=3453 | |entrez_id=3453 | ||
|gc_percent=0.40796 | |gc_percent=0.40796 | ||
|gene_alias=IFNAP22 | |gene_alias=IFNAP22 | ||
|gene_description= | |gene_description=interferon alpha 22, pseudogene | ||
|gene_name=IFNA22P | |gene_id= | ||
|gene_name=interferon alpha 22, pseudogene | |||
|gene_source=HGNC:5431 | |||
|gene_symbol=IFNA22P | |||
|gene_synonyms= | |||
|gene_type=pseudo | |gene_type=pseudo | ||
|hgnc_mgi_id=HGNC:5431 | |||
|nearest_ensembl= | |nearest_ensembl= | ||
|nearest_promoter_id=NR_036676 | |nearest_promoter_id=NR_036676 | ||
|nearest_refseq=NR_036676 | |nearest_refseq=NR_036676 | ||
|nearest_unigene=Hs.545842 | |nearest_unigene=Hs.545842 | ||
|tata_box= | |num_trans= | ||
|species=human | |||
|start=21278663 | |||
|start_of_center_position=21278676 | |||
|strand=- | |||
|tata_box=-45(CCCTATTTAAGG,-,0.00) | |||
|transcript_name=ENST00000458710.2 | |||
|tss_classification=no | |||
|tss_id=hg_100210.1 | |tss_id=hg_100210.1 | ||
|tss_score=1 | |||
|uniprot_id= | |||
}} | }} | ||
Latest revision as of 17:38, 19 July 2021
Basic information about the TSS
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| TSS cluster detected* |
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* The number of TSS cluster called studies (maximum 16)
Gene and protein annotation
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TATA-Box annotation
| Distance to TSS: | -113 |
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| Nearest PromoterID: | NR_036676 |
| Entrez ID: | 3453 |
| Nearest Unigene: | Hs.545842 |
| Nearest Refseq: | NR_036676 |
| Nearest Ensembl: | |
| Gene Name: | interferon alpha 22, pseudogene |
| Gene Alias: | IFNAP22 |
| Gene Description: | interferon alpha 22, pseudogene |
| Gene Type: | pseudo |
| CpG%: | 0.005 |
| GC%: | 0.40796 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): | -45(CCCTATTTAAGG,-,0.00) |
TSS expression
Expression data not found.