TSS: Hg 100213.1: Difference between revisions
From referenceTSS
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{{TSSDetail | {{TSSDetail | ||
|IFNA= | |||
|IFNA2B= | |||
|INFA2= | |||
|all_trans=HGNC:5423 | |||
|chr=chr9 | |||
|cpg_percent=0.005 | |cpg_percent=0.005 | ||
|distance_to_tss= | |distance=0 | ||
|distance_to_tss=1 | |||
|end=21385398 | |||
|end_of_center_position=21385397 | |||
|entrez_id=3440 | |entrez_id=3440 | ||
|gc_percent=0.442786 | |gc_percent=0.442786 | ||
|gene_alias=IFN-alphaA | |gene_alias=IFN-alphaA{{!}}IFNA{{!}}IFNA2B{{!}}INFA2 | ||
|gene_description=interferon alpha 2 | |gene_description=interferon alpha 2 | ||
|gene_name=IFNA2 | |gene_id=3440 | ||
|gene_name=interferon alpha 2 | |||
|gene_source=HGNC:5423 | |||
|gene_symbol=IFNA2 | |||
|gene_synonyms=IFN-alphaA IFNA | |||
|gene_type=protein-coding | |gene_type=protein-coding | ||
|hgnc_mgi_id=HGNC:5423 | |||
|nearest_ensembl=ENSG00000188379 | |nearest_ensembl=ENSG00000188379 | ||
|nearest_promoter_id=NM_000605 | |nearest_promoter_id=NM_000605 | ||
|nearest_refseq=NM_000605 | |nearest_refseq=NM_000605 | ||
|nearest_unigene=Hs.211575 | |nearest_unigene=Hs.211575 | ||
|tata_box= | |num_trans=3440 | ||
|species=human | |||
|start=21385395 | |||
|start_of_center_position=21385396 | |||
|strand=- | |||
|tata_box=-35(CCCTATTTAAGG,-,0.00) | |||
|transcript_name=ENST00000380206.4 | |||
|tss_classification=no | |||
|tss_id=hg_100213.1 | |tss_id=hg_100213.1 | ||
|tss_score=1 | |||
|uniprot_id=P01563 | |||
}} | }} | ||
Latest revision as of 17:38, 19 July 2021
Basic information about the TSS
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| TSS cluster detected* |
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* The number of TSS cluster called studies (maximum 16)
Gene and protein annotation
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TATA-Box annotation
| Distance to TSS: | 1 |
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| Nearest PromoterID: | NM_000605 |
| Entrez ID: | 3440 |
| Nearest Unigene: | Hs.211575 |
| Nearest Refseq: | NM_000605 |
| Nearest Ensembl: | ENSG00000188379 |
| Gene Name: | interferon alpha 2 |
| Gene Alias: | IFN-alphaA|IFNA|IFNA2B|INFA2 |
| Gene Description: | interferon alpha 2 |
| Gene Type: | protein-coding |
| CpG%: | 0.005 |
| GC%: | 0.442786 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): | -35(CCCTATTTAAGG,-,0.00) |
TSS expression
Expression data not found.