TSS: Hg 100311.1: Difference between revisions
From referenceTSS
(Created page with "{{TSSDetail |cpg_percent=0 |distance_to_tss=195259 |entrez_id=100506422 |gc_percent=0.467662 |gene_alias=- |gene_description=putative deoxyuridine 5'-triphosphate nucleotidohy...") |
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{{TSSDetail | {{TSSDetail | ||
|chr=chr9 | |||
|cpg_percent=0 | |cpg_percent=0 | ||
|distance=NA | |||
|distance_to_tss=195259 | |distance_to_tss=195259 | ||
|end=26261938 | |||
|end_of_center_position=26261935 | |||
|entrez_id=100506422 | |entrez_id=100506422 | ||
|gc_percent=0.467662 | |gc_percent=0.467662 | ||
| Line 12: | Line 16: | ||
|nearest_refseq=NM_001004352 | |nearest_refseq=NM_001004352 | ||
|nearest_unigene=Hs.533221 | |nearest_unigene=Hs.533221 | ||
|tata_box= | |num_trans=0 | ||
|species=human | |||
|start=26261930 | |||
|start_of_center_position=26261934 | |||
|strand=- | |||
|tata_box=-34(CTCCTTAAAAAC,-,0.00),-32(CCTTAAAAACCC,+,0.00) | |||
|transcript_name= | |||
|tss_classification=no | |||
|tss_id=hg_100311.1 | |tss_id=hg_100311.1 | ||
|tss_score=1 | |||
}} | }} | ||
Latest revision as of 14:22, 14 June 2021
Basic information about the TSS
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| TSS cluster detected* |
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* The number of TSS cluster called studies (maximum 16)
Gene and protein annotation
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TATA-Box annotation
| Distance to TSS: | 195259 |
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| Nearest PromoterID: | NM_001004352 |
| Entrez ID: | 100506422 |
| Nearest Unigene: | Hs.533221 |
| Nearest Refseq: | NM_001004352 |
| Nearest Ensembl: | |
| Gene Name: | LOC100506422 |
| Gene Alias: | - |
| Gene Description: | putative deoxyuridine 5'-triphosphate nucleotidohydrolase-like protein FLJ16323 |
| Gene Type: | protein-coding |
| CpG%: | 0 |
| GC%: | 0.467662 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): | -34(CTCCTTAAAAAC,-,0.00),-32(CCTTAAAAACCC,+,0.00) |