TSS: Hg 132405.1: Difference between revisions
From referenceTSS
(Created page with "{{TSSDetail |all_trans=ENST00000550962.5:0 uc058roa.1:0 BC043398:96 ENST00000552810.5:-117 NM_025114:-117 uc001tar.4:-117 DQ109808:-117 AK023677:-117 |chr=chr12 |cpg_percent=0...") |
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{{TSSDetail | {{TSSDetail | ||
|all_trans= | |BBS14= | ||
|CT87= | |||
|JBTS5= | |||
|LCA10= | |||
|MKS4= | |||
|NPHP6= | |||
|POC3= | |||
|SLSN6= | |||
|all_trans=HGNC:29021 | |||
|chr=chr12 | |chr=chr12 | ||
|cpg_percent=0.08 | |cpg_percent=0.08 | ||
| Line 6: | Line 14: | ||
|distance_to_tss=134 | |distance_to_tss=134 | ||
|end=88142099 | |end=88142099 | ||
|end_of_center_position=88142083 | |||
|entrez_id=80184 | |entrez_id=80184 | ||
|gc_percent=0.60199 | |gc_percent=0.60199 | ||
|gene_alias=3H11Ag | |gene_alias=3H11Ag{{!}}BBS14{{!}}CT87{{!}}JBTS5{{!}}LCA10{{!}}MKS4{{!}}NPHP6{{!}}POC3{{!}}SLSN6{{!}}rd16 | ||
|gene_description=centrosomal protein 290 | |gene_description=centrosomal protein 290 | ||
|gene_id=80184 | |gene_id=80184 | ||
|gene_name=centrosomal protein | |gene_name=centrosomal protein 290 | ||
|gene_source=HGNC:29021 | |gene_source=HGNC:29021 | ||
|gene_symbol=CEP290 | |gene_symbol=CEP290 | ||
| Line 21: | Line 30: | ||
|nearest_refseq=NM_025114 | |nearest_refseq=NM_025114 | ||
|nearest_unigene=Hs.150444 | |nearest_unigene=Hs.150444 | ||
|num_trans= | |num_trans=80184 | ||
|rd16= | |||
|species=human | |species=human | ||
|start=88142065 | |start=88142065 | ||
|start_of_center_position=88142082 | |||
|strand=- | |strand=- | ||
|transcript_name= | |transcript_name=ENST00000552810.6 ENST00000674971.1 ENST00000672414.2 ENST00000673058.2 ENST00000675833.1 ENST00000675476.1 ENST00000309041.12 ENST00000675794.1 ENST00000676074.1 ENST00000675408.1 ENST00000675230.1 ENST00000675628.1 ENST00000676448.1 ENST00000547926.7 ENST00000671822.2 ENST00000676351.1 ENST00000397838.8 ENST00000675559.1 ENST00000676418.1 ENST00000676331.1 ENST00000552770.3 | ||
|tss_classification=yes | |tss_classification=yes | ||
|tss_id=hg_132405.1 | |tss_id=hg_132405.1 | ||
|tss_score=1 | |tss_score=1 | ||
|uniprot_id= | |uniprot_id=A0A0A0MS86 A0A5F9ZHU6 A0A5F9ZHV7 F8VS29 F8W0V9 J3KNF5 O15078 Q05BJ6 | ||
}} | }} | ||
Latest revision as of 05:18, 20 July 2021
Basic information about the TSS
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| TSS cluster detected* |
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* The number of TSS cluster called studies (maximum 16)
Gene and protein annotation
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TATA-Box annotation
| Distance to TSS: | 134 |
|---|---|
| Nearest PromoterID: | NM_025114 |
| Entrez ID: | 80184 |
| Nearest Unigene: | Hs.150444 |
| Nearest Refseq: | NM_025114 |
| Nearest Ensembl: | ENSG00000198707 |
| Gene Name: | centrosomal protein 290 |
| Gene Alias: | 3H11Ag|BBS14|CT87|JBTS5|LCA10|MKS4|NPHP6|POC3|SLSN6|rd16 |
| Gene Description: | centrosomal protein 290 |
| Gene Type: | protein-coding |
| CpG%: | 0.08 |
| GC%: | 0.60199 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
TSS expression
Expression data not found.