TSS: Hg 100350.1: Difference between revisions
From referenceTSS
(Created page with "{{TSSDetail |cpg_percent=0.015 |distance_to_tss=872 |entrez_id=203228 |gc_percent=0.502488 |gene_alias=ALSFTD|DENNL72|FTDALS|FTDALS1 |gene_description=chromosome 9 open readin...") |
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{{TSSDetail | {{TSSDetail | ||
|DENND9= | |||
|DENNL72= | |||
|FTDALS= | |||
|FTDALS1= | |||
|chr=chr9 | |||
|cpg_percent=0.015 | |cpg_percent=0.015 | ||
|distance_to_tss= | |distance=NA | ||
|distance_to_tss=860 | |||
|end=27572629 | |||
|end_of_center_position=27572622 | |||
|entrez_id=203228 | |entrez_id=203228 | ||
|gc_percent=0.502488 | |gc_percent=0.502488 | ||
|gene_alias=ALSFTD | |gene_alias=ALSFTD{{!}}DENND9{{!}}DENNL72{{!}}FTDALS{{!}}FTDALS1 | ||
|gene_description= | |gene_description=C9orf72-SMCR8 complex subunit | ||
|gene_name=C9orf72 | |gene_name=C9orf72 | ||
|gene_type=protein-coding | |gene_type=protein-coding | ||
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|nearest_refseq=NM_018325 | |nearest_refseq=NM_018325 | ||
|nearest_unigene=Hs.493639 | |nearest_unigene=Hs.493639 | ||
|num_trans=0 | |||
|species=human | |||
|start=27572613 | |||
|start_of_center_position=27572621 | |||
|strand=- | |||
|transcript_name= | |||
|tss_classification=no | |||
|tss_id=hg_100350.1 | |tss_id=hg_100350.1 | ||
|tss_score=1 | |||
}} | }} | ||
Latest revision as of 16:15, 15 June 2021
Basic information about the TSS
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| TSS cluster detected* |
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* The number of TSS cluster called studies (maximum 16)
Gene and protein annotation
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TATA-Box annotation
| Distance to TSS: | 860 |
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| Nearest PromoterID: | NM_018325 |
| Entrez ID: | 203228 |
| Nearest Unigene: | Hs.493639 |
| Nearest Refseq: | NM_018325 |
| Nearest Ensembl: | ENSG00000147894 |
| Gene Name: | C9orf72 |
| Gene Alias: | ALSFTD|DENND9|DENNL72|FTDALS|FTDALS1 |
| Gene Description: | C9orf72-SMCR8 complex subunit |
| Gene Type: | protein-coding |
| CpG%: | 0.015 |
| GC%: | 0.502488 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |