TSS: Hg 105573.1: Difference between revisions

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{{TSSDetail
{{TSSDetail
|CMH15=
|HEL114=
|MV=
|MVCL=
|all_trans=LF209953:-20 MA445530:-20 ENST00000624354.3:21 ENST00000372755.7:21 AK304823:21 EU794673:21 LF384967:21 MA620544:21 ENST00000478896.2:23 ENST00000211998.10:23 NM_003373:23 NM_014000:23 AK300280:23 AK296509:24 LF333168:26 MA568745:26 BC099919:33 BC039174:34 GQ900900:34 M33308:72 AB385172:111 DQ894680:115
|chr=chr10
|cpg_percent=0.11
|cpg_percent=0.11
|distance=-20
|distance_to_tss=-26
|distance_to_tss=-26
|end=73998093
|end_of_center_position=73998089
|entrez_id=7414
|entrez_id=7414
|gc_percent=0.681592
|gc_percent=0.681592
|gene_alias=CMD1W|CMH15|HEL114|MV|MVCL
|gene_alias=CMD1W{{!}}CMH15{{!}}HEL114{{!}}MV{{!}}MVCL
|gene_description=vinculin
|gene_description=vinculin
|gene_id=7414
|gene_name=VCL
|gene_name=VCL
|gene_source=HGNC:12665
|gene_symbol=VCL
|gene_synonyms=
|gene_type=protein-coding
|gene_type=protein-coding
|hgnc_mgi_id=HGNC:12665
|nearest_ensembl=ENSG00000035403
|nearest_ensembl=ENSG00000035403
|nearest_promoter_id=NM_003373
|nearest_promoter_id=NM_014000
|nearest_refseq=NM_003373
|nearest_refseq=NM_003373
|nearest_unigene=Hs.643896
|nearest_unigene=Hs.643896
|num_trans=22
|species=human
|start=73998083
|start_of_center_position=73998088
|strand=+
|transcript_name=LF209953 MA445530
|tss_classification=yes
|tss_id=hg_105573.1
|tss_id=hg_105573.1
|tss_score=1
|uniprot_id=A0A024QZN4 A0A096LPE1 B4E3Q9 P18206 V9HWK2
}}
}}

Latest revision as of 18:17, 15 June 2021

Basic information about the TSS


TSS ID:hg_105573.1
Species:human
Chr:chr10
Start:73998083
End:73998093
Strand:+
TSS cluster detected*

  * The number of TSS cluster called studies (maximum 16)



Gene and protein annotation


Transcript_name:LF209953 MA445530
Distance:-20
GeneID:7414
HGNC/MGI_ID:HGNC:12665
UniProt_ID:A0A024QZN4 A0A096LPE1 B4E3Q9 P18206 V9HWK2
Gene_name:VCL
Gene_symbol:VCL
Gene_synonyms:
Gene_source:HGNC:12665



TATA-Box annotation


Distance to TSS:-26
Nearest PromoterID:NM_014000
Entrez ID:7414
Nearest Unigene:Hs.643896
Nearest Refseq:NM_003373
Nearest Ensembl:ENSG00000035403
Gene Name:VCL
Gene Alias:CMD1W|CMH15|HEL114|MV|MVCL
Gene Description:vinculin
Gene Type:protein-coding
CpG%:0.11
GC%:0.681592
TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation):



TSS expression

Expression data not found.