TSS: Hg 100363.1: Difference between revisions
From referenceTSS
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{{TSSDetail | {{TSSDetail | ||
|DENND9= | |||
|DENNL72= | |||
|FTDALS= | |||
|FTDALS1= | |||
|chr=chr9 | |||
|cpg_percent=0.02 | |cpg_percent=0.02 | ||
|distance=NA | |||
|distance_to_tss=-127913 | |distance_to_tss=-127913 | ||
|end=27701789 | |||
|end_of_center_position=27701779 | |||
|entrez_id=203228 | |entrez_id=203228 | ||
|gc_percent=0.457711 | |gc_percent=0.457711 | ||
|gene_alias=ALSFTD | |gene_alias=ALSFTD{{!}}DENND9{{!}}DENNL72{{!}}FTDALS{{!}}FTDALS1 | ||
|gene_description= | |gene_description=C9orf72-SMCR8 complex subunit | ||
|gene_name=C9orf72 | |gene_name=C9orf72 | ||
|gene_type=protein-coding | |gene_type=protein-coding | ||
Line 12: | Line 20: | ||
|nearest_refseq=NM_018325 | |nearest_refseq=NM_018325 | ||
|nearest_unigene=Hs.493639 | |nearest_unigene=Hs.493639 | ||
|tata_box= | |num_trans=0 | ||
|species=human | |||
|start=27701768 | |||
|start_of_center_position=27701778 | |||
|strand=- | |||
|tata_box=77(CCTTTTTTAAGG,-,0.00),79(TTTTTTAAGGAC,+,0.00) | |||
|transcript_name= | |||
|tss_classification=no | |||
|tss_id=hg_100363.1 | |tss_id=hg_100363.1 | ||
|tss_score=1 | |||
}} | }} |
Latest revision as of 16:15, 15 June 2021
Basic information about the TSS
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TSS cluster detected* |
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* The number of TSS cluster called studies (maximum 16)
Gene and protein annotation
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TATA-Box annotation
Distance to TSS: | -127913 |
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Nearest PromoterID: | NM_001256054 |
Entrez ID: | 203228 |
Nearest Unigene: | Hs.493639 |
Nearest Refseq: | NM_018325 |
Nearest Ensembl: | ENSG00000147894 |
Gene Name: | C9orf72 |
Gene Alias: | ALSFTD|DENND9|DENNL72|FTDALS|FTDALS1 |
Gene Description: | C9orf72-SMCR8 complex subunit |
Gene Type: | protein-coding |
CpG%: | 0.02 |
GC%: | 0.457711 |
TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): | 77(CCTTTTTTAAGG,-,0.00),79(TTTTTTAAGGAC,+,0.00) |