TSS: Hg 10242.1: Difference between revisions
From referenceTSS
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|alcalpha1= | |alcalpha1= | ||
|alcalpha2= | |alcalpha2= | ||
|all_trans=LF357436:0 MA593013:0 | |||
|chr=chr1 | |chr=chr1 | ||
|cpg_percent=0.05 | |cpg_percent=0.05 | ||
|distance= | |distance=0 | ||
|distance_to_tss=51201 | |distance_to_tss=51201 | ||
|end=9773340 | |end=9773340 | ||
| Line 15: | Line 16: | ||
|entrez_id=22883 | |entrez_id=22883 | ||
|gc_percent=0.517413 | |gc_percent=0.517413 | ||
|gene_alias=ALC-ALPHA | |gene_alias=ALC-ALPHA{{!}}CDHR12{{!}}CST-1{{!}}CSTN1{{!}}PIK3CD{{!}}XB31alpha{{!}}alcalpha1{{!}}alcalpha2 | ||
|gene_description=calsyntenin 1 | |gene_description=calsyntenin 1 | ||
|gene_name=CLSTN1 | |gene_name=CLSTN1 | ||
|gene_type=protein-coding | |gene_type=protein-coding | ||
|nearest_ensembl=ENSG00000171603 | |nearest_ensembl=ENSG00000171603 | ||
|nearest_promoter_id= | |nearest_promoter_id=NM_014944 | ||
|nearest_refseq=NM_014944 | |nearest_refseq=NM_014944 | ||
|nearest_unigene=Hs.29665 | |nearest_unigene=Hs.29665 | ||
|num_trans= | |num_trans=2 | ||
|species=human | |species=human | ||
|start=9773310 | |start=9773310 | ||
|start_of_center_position=9773325 | |start_of_center_position=9773325 | ||
|strand=- | |strand=- | ||
|transcript_name= | |transcript_name=LF357436 MA593013 | ||
|tss_classification=no | |tss_classification=no | ||
|tss_id=hg_10242.1 | |tss_id=hg_10242.1 | ||
|tss_score=1 | |tss_score=1 | ||
}} | }} | ||
Latest revision as of 17:03, 15 June 2021
Basic information about the TSS
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| TSS cluster detected* |
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* The number of TSS cluster called studies (maximum 16)
Gene and protein annotation
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TATA-Box annotation
| Distance to TSS: | 51201 |
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| Nearest PromoterID: | NM_014944 |
| Entrez ID: | 22883 |
| Nearest Unigene: | Hs.29665 |
| Nearest Refseq: | NM_014944 |
| Nearest Ensembl: | ENSG00000171603 |
| Gene Name: | CLSTN1 |
| Gene Alias: | ALC-ALPHA|CDHR12|CST-1|CSTN1|PIK3CD|XB31alpha|alcalpha1|alcalpha2 |
| Gene Description: | calsyntenin 1 |
| Gene Type: | protein-coding |
| CpG%: | 0.05 |
| GC%: | 0.517413 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |