TSS: Hg 1004.1: Difference between revisions
From referenceTSS
(Created page with "{{TSSDetail |cpg_percent=0.01 |distance_to_tss=14694 |entrez_id=55160 |gc_percent=0.383085 |gene_alias=GrinchGEF |gene_description=Rho guanine nucleotide exchange factor 10 li...") |
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{{TSSDetail | {{TSSDetail | ||
|chr=chr1 | |||
|cpg_percent=0.01 | |cpg_percent=0.01 | ||
|distance=NA | |||
|distance_to_tss=14694 | |distance_to_tss=14694 | ||
|end=17595248 | |||
|end_of_center_position=17595247 | |||
|entrez_id=55160 | |entrez_id=55160 | ||
|gc_percent=0.383085 | |gc_percent=0.383085 | ||
Line 9: | Line 13: | ||
|gene_type=protein-coding | |gene_type=protein-coding | ||
|nearest_ensembl=ENSG00000074964 | |nearest_ensembl=ENSG00000074964 | ||
|nearest_promoter_id= | |nearest_promoter_id=NM_001319837 | ||
|nearest_refseq=NM_018125 | |nearest_refseq=NM_018125 | ||
|nearest_unigene=Hs.443460 | |nearest_unigene=Hs.443460 | ||
|tata_box= | |num_trans=0 | ||
|species=human | |||
|start=17595245 | |||
|start_of_center_position=17595246 | |||
|strand=+ | |||
|tata_box=-74(GTTTTTATAGAA,+,0.00),-7(TTTTTTAAAGCT,+,0.00) | |||
|transcript_name= | |||
|tss_classification=no | |||
|tss_id=hg_1004.1 | |tss_id=hg_1004.1 | ||
|tss_score=1 | |||
}} | }} |
Latest revision as of 15:18, 15 June 2021
Basic information about the TSS
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TSS cluster detected* |
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* The number of TSS cluster called studies (maximum 16)
Gene and protein annotation
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TATA-Box annotation
Distance to TSS: | 14694 |
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Nearest PromoterID: | NM_001319837 |
Entrez ID: | 55160 |
Nearest Unigene: | Hs.443460 |
Nearest Refseq: | NM_018125 |
Nearest Ensembl: | ENSG00000074964 |
Gene Name: | ARHGEF10L |
Gene Alias: | GrinchGEF |
Gene Description: | Rho guanine nucleotide exchange factor 10 like |
Gene Type: | protein-coding |
CpG%: | 0.01 |
GC%: | 0.383085 |
TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): | -74(GTTTTTATAGAA,+,0.00),-7(TTTTTTAAAGCT,+,0.00) |