TSS: Mm 35585.1: Difference between revisions
From referenceTSS
No edit summary |
No edit summary |
||
| (One intermediate revision by the same user not shown) | |||
| Line 9: | Line 9: | ||
|Scya27= | |Scya27= | ||
|Scya27a= | |Scya27a= | ||
|all_trans= | |all_trans=MGI:1343459 | ||
|chr=chr4 | |chr=chr4 | ||
|cpg_percent=0.05 | |cpg_percent=0.05 | ||
| Line 18: | Line 18: | ||
|entrez_id=20301 | |entrez_id=20301 | ||
|gc_percent=0.59204 | |gc_percent=0.59204 | ||
|gene_alias=ALP | |gene_alias=ALP{{!}}AW558992{{!}}CTACK{{!}}CTAK{{!}}Ccl27{{!}}ESkine{{!}}ILC{{!}}PESKY{{!}}Scya27{{!}}Scya27a | ||
|gene_description=chemokine (C-C motif) ligand 27A | |gene_description=chemokine (C-C motif) ligand 27A | ||
|gene_id=20301 | |gene_id=20301 | ||
| Line 31: | Line 31: | ||
|nearest_refseq=NM_011336 | |nearest_refseq=NM_011336 | ||
|nearest_unigene=Mm.335946 | |nearest_unigene=Mm.335946 | ||
|num_trans= | |num_trans=20301 | ||
|species=mouse | |species=mouse | ||
|start=41774164 | |start=41774164 | ||
|start_of_center_position=41774170 | |start_of_center_position=41774170 | ||
|strand=- | |strand=- | ||
|transcript_name=ENSMUST00000155322.7 | |transcript_name=ENSMUST00000155322.7 ENSMUST00000173865.8 | ||
|tss_classification=yes | |tss_classification=yes | ||
|tss_id=mm_35585.1 | |tss_id=mm_35585.1 | ||
|tss_score=1 | |tss_score=1 | ||
|uniprot_id=A2AMS7 A2AMS8 | |uniprot_id=A0A2I3BQE5 A2AMS6 A2AMS7 A2AMS8 | ||
}} | }} | ||
Latest revision as of 20:00, 27 July 2021
Basic information about the TSS
|
| |||||||||||||
| TSS cluster detected* |
|---|
* The number of TSS cluster called studies (maximum 5)
Gene and protein annotation
|
|
TATA-Box annotation
| Distance to TSS: | 6 |
|---|---|
| Nearest PromoterID: | NM_001164044 |
| Entrez ID: | 20301 |
| Nearest Unigene: | Mm.335946 |
| Nearest Refseq: | NM_011336 |
| Nearest Ensembl: | ENSMUSG00000073888 |
| Gene Name: | chemokine (C-C motif) ligand 27A |
| Gene Alias: | ALP|AW558992|CTACK|CTAK|Ccl27|ESkine|ILC|PESKY|Scya27|Scya27a |
| Gene Description: | chemokine (C-C motif) ligand 27A |
| Gene Type: | protein-coding |
| CpG%: | 0.05 |
| GC%: | 0.59204 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
TSS expression
Expression data not found.