TSS: Hg 143355.1: Difference between revisions
From referenceTSS
(Created page with "{{TSSDetail |chr=chr14 |cpg_percent=0.045 |distance= |distance_to_tss=-25990 |end=55103252 |entrez_id=3958 |gc_percent=0.58209 |gene_alias=CBP35|GAL3|GALBP|GALIG|L31|LGALS2|MA...") |
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{{TSSDetail | {{TSSDetail | ||
|GAL3= | |||
|GALBP= | |||
|GALIG= | |||
|L31= | |||
|LGALS2= | |||
|MAC2= | |||
|all_trans=MG828523:-64 | |||
|chr=chr14 | |chr=chr14 | ||
|cpg_percent=0.045 | |cpg_percent=0.045 | ||
|distance= | |distance=-64 | ||
|distance_to_tss=- | |distance_to_tss=-26025 | ||
|end=55103252 | |end=55103252 | ||
|end_of_center_position=55103228 | |||
|entrez_id=3958 | |entrez_id=3958 | ||
|gc_percent=0.58209 | |gc_percent=0.58209 | ||
|gene_alias=CBP35 | |gene_alias=CBP35{{!}}GAL3{{!}}GALBP{{!}}GALIG{{!}}L31{{!}}LGALS2{{!}}MAC2 | ||
|gene_description=galectin 3 | |gene_description=galectin 3 | ||
|gene_name=LGALS3 | |gene_name=LGALS3 | ||
|gene_type=protein-coding | |gene_type=protein-coding | ||
|nearest_ensembl=ENSG00000131981 | |nearest_ensembl=ENSG00000131981 | ||
|nearest_promoter_id= | |nearest_promoter_id=NM_002306 | ||
|nearest_refseq=NM_002306 | |nearest_refseq=NM_002306 | ||
|nearest_unigene=Hs.531081 | |nearest_unigene=Hs.531081 | ||
|num_trans= | |num_trans=1 | ||
|species=human | |species=human | ||
|start=55103202 | |start=55103202 | ||
|start_of_center_position=55103227 | |||
|strand=- | |strand=- | ||
|transcript_name= | |transcript_name=MG828523 | ||
|tss_classification=no | |tss_classification=no | ||
|tss_id=hg_143355.1 | |tss_id=hg_143355.1 | ||
|tss_score=1 | |tss_score=1 | ||
}} | }} | ||
Latest revision as of 08:55, 16 June 2021
Basic information about the TSS
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| TSS cluster detected* |
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* The number of TSS cluster called studies (maximum 16)
Gene and protein annotation
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TATA-Box annotation
| Distance to TSS: | -26025 |
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| Nearest PromoterID: | NM_002306 |
| Entrez ID: | 3958 |
| Nearest Unigene: | Hs.531081 |
| Nearest Refseq: | NM_002306 |
| Nearest Ensembl: | ENSG00000131981 |
| Gene Name: | LGALS3 |
| Gene Alias: | CBP35|GAL3|GALBP|GALIG|L31|LGALS2|MAC2 |
| Gene Description: | galectin 3 |
| Gene Type: | protein-coding |
| CpG%: | 0.045 |
| GC%: | 0.58209 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |