TSS: Hg 100363.1: Difference between revisions
From referenceTSS
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{{TSSDetail | {{TSSDetail | ||
|DENND9= | |||
|DENNL72= | |DENNL72= | ||
|FTDALS= | |FTDALS= | ||
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|chr=chr9 | |chr=chr9 | ||
|cpg_percent=0.02 | |cpg_percent=0.02 | ||
|distance= | |distance=NA | ||
|distance_to_tss=-127913 | |distance_to_tss=-127913 | ||
|end=27701789 | |end=27701789 | ||
| Line 11: | Line 12: | ||
|entrez_id=203228 | |entrez_id=203228 | ||
|gc_percent=0.457711 | |gc_percent=0.457711 | ||
|gene_alias=ALSFTD | |gene_alias=ALSFTD{{!}}DENND9{{!}}DENNL72{{!}}FTDALS{{!}}FTDALS1 | ||
|gene_description= | |gene_description=C9orf72-SMCR8 complex subunit | ||
|gene_name=C9orf72 | |gene_name=C9orf72 | ||
|gene_type=protein-coding | |gene_type=protein-coding | ||
| Line 24: | Line 25: | ||
|start_of_center_position=27701778 | |start_of_center_position=27701778 | ||
|strand=- | |strand=- | ||
|tata_box= | |tata_box=77(CCTTTTTTAAGG,-,0.00),79(TTTTTTAAGGAC,+,0.00) | ||
|transcript_name= | |transcript_name= | ||
|tss_classification=no | |tss_classification=no | ||
Latest revision as of 16:15, 15 June 2021
Basic information about the TSS
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| TSS cluster detected* |
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* The number of TSS cluster called studies (maximum 16)
Gene and protein annotation
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TATA-Box annotation
| Distance to TSS: | -127913 |
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| Nearest PromoterID: | NM_001256054 |
| Entrez ID: | 203228 |
| Nearest Unigene: | Hs.493639 |
| Nearest Refseq: | NM_018325 |
| Nearest Ensembl: | ENSG00000147894 |
| Gene Name: | C9orf72 |
| Gene Alias: | ALSFTD|DENND9|DENNL72|FTDALS|FTDALS1 |
| Gene Description: | C9orf72-SMCR8 complex subunit |
| Gene Type: | protein-coding |
| CpG%: | 0.02 |
| GC%: | 0.457711 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): | 77(CCTTTTTTAAGG,-,0.00),79(TTTTTTAAGGAC,+,0.00) |