TSS: Hg 100538.1: Difference between revisions
From referenceTSS
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|chr=chr9 | |chr=chr9 | ||
|cpg_percent=0.04 | |cpg_percent=0.04 | ||
|distance= | |distance=NA | ||
|distance_to_tss= | |distance_to_tss=1470 | ||
|end=34636319 | |end=34636319 | ||
|end_of_center_position=34636317 | |end_of_center_position=34636317 | ||
|entrez_id=10280 | |entrez_id=10280 | ||
|gc_percent=0.467662 | |gc_percent=0.467662 | ||
|gene_alias=ALS16 | |gene_alias=ALS16{{!}}DSMA2{{!}}OPRS1{{!}}SIG-1R{{!}}SR-BP{{!}}SR-BP1{{!}}SRBP{{!}}hSigmaR1{{!}}sigma1R | ||
|gene_description=sigma non-opioid intracellular receptor 1 | |gene_description=sigma non-opioid intracellular receptor 1 | ||
|gene_name=SIGMAR1 | |gene_name=SIGMAR1 | ||
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|hSigmaR1= | |hSigmaR1= | ||
|nearest_ensembl=ENSG00000147955 | |nearest_ensembl=ENSG00000147955 | ||
|nearest_promoter_id= | |nearest_promoter_id=NM_001282205 | ||
|nearest_refseq=NM_005866 | |nearest_refseq=NM_005866 | ||
|nearest_unigene=Hs.522087 | |nearest_unigene=Hs.522087 | ||
| Line 30: | Line 30: | ||
|strand=- | |strand=- | ||
|transcript_name= | |transcript_name= | ||
|tss_classification= | |tss_classification=yes | ||
|tss_id=hg_100538.1 | |tss_id=hg_100538.1 | ||
|tss_score=1 | |tss_score=1 | ||
}} | }} | ||
Latest revision as of 17:46, 12 July 2021
Basic information about the TSS
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| TSS cluster detected* |
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* The number of TSS cluster called studies (maximum 16)
Gene and protein annotation
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TATA-Box annotation
| Distance to TSS: | 1470 |
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| Nearest PromoterID: | NM_001282205 |
| Entrez ID: | 10280 |
| Nearest Unigene: | Hs.522087 |
| Nearest Refseq: | NM_005866 |
| Nearest Ensembl: | ENSG00000147955 |
| Gene Name: | SIGMAR1 |
| Gene Alias: | ALS16|DSMA2|OPRS1|SIG-1R|SR-BP|SR-BP1|SRBP|hSigmaR1|sigma1R |
| Gene Description: | sigma non-opioid intracellular receptor 1 |
| Gene Type: | protein-coding |
| CpG%: | 0.04 |
| GC%: | 0.467662 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |