TSS: Hg 100611.1: Difference between revisions
From referenceTSS
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|DA1= | |DA1= | ||
|DA2B= | |DA2B= | ||
|DA2B4= | |||
|HEL-S-273= | |HEL-S-273= | ||
|NEM4= | |NEM4= | ||
| Line 7: | Line 8: | ||
|chr=chr9 | |chr=chr9 | ||
|cpg_percent=0.02 | |cpg_percent=0.02 | ||
|distance= | |distance=NA | ||
|distance_to_tss= | |distance_to_tss=5647 | ||
|end=35684280 | |end=35684280 | ||
|end_of_center_position=35684278 | |end_of_center_position=35684278 | ||
|entrez_id=7169 | |entrez_id=7169 | ||
|gc_percent=0.502488 | |gc_percent=0.502488 | ||
|gene_alias=AMCD1 | |gene_alias=AMCD1{{!}}DA1{{!}}DA2B{{!}}DA2B4{{!}}HEL-S-273{{!}}NEM4{{!}}TMSB | ||
|gene_description=tropomyosin 2 | |gene_description=tropomyosin 2 | ||
|gene_name=TPM2 | |gene_name=TPM2 | ||
|gene_type=protein-coding | |gene_type=protein-coding | ||
|nearest_ensembl=ENSG00000198467 | |nearest_ensembl=ENSG00000198467 | ||
|nearest_promoter_id= | |nearest_promoter_id=NM_001301226 | ||
|nearest_refseq=NM_003289 | |nearest_refseq=NM_003289 | ||
|nearest_unigene=Hs.300772 | |nearest_unigene=Hs.300772 | ||
| Line 26: | Line 27: | ||
|start_of_center_position=35684277 | |start_of_center_position=35684277 | ||
|strand=- | |strand=- | ||
|tata_box= | |tata_box=42(GCCTTTATAAGT,-,0.00) | ||
|transcript_name= | |transcript_name= | ||
|tss_classification=no | |tss_classification=no | ||
Latest revision as of 16:21, 15 June 2021
Basic information about the TSS
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| TSS cluster detected* |
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* The number of TSS cluster called studies (maximum 16)
Gene and protein annotation
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TATA-Box annotation
| Distance to TSS: | 5647 |
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| Nearest PromoterID: | NM_001301226 |
| Entrez ID: | 7169 |
| Nearest Unigene: | Hs.300772 |
| Nearest Refseq: | NM_003289 |
| Nearest Ensembl: | ENSG00000198467 |
| Gene Name: | TPM2 |
| Gene Alias: | AMCD1|DA1|DA2B|DA2B4|HEL-S-273|NEM4|TMSB |
| Gene Description: | tropomyosin 2 |
| Gene Type: | protein-coding |
| CpG%: | 0.02 |
| GC%: | 0.502488 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): | 42(GCCTTTATAAGT,-,0.00) |