TSS: Hg 101061.1: Difference between revisions
From referenceTSS
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|chr=chr9 | |chr=chr9 | ||
|cpg_percent=0.015 | |cpg_percent=0.015 | ||
|distance= | |distance=NA | ||
|distance_to_tss=1345 | |distance_to_tss=1345 | ||
|end=76904748 | |end=76904748 | ||
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|entrez_id=158471 | |entrez_id=158471 | ||
|gc_percent=0.378109 | |gc_percent=0.378109 | ||
|gene_alias=BMCC1 | |gene_alias=BMCC1{{!}}BNIPXL{{!}}C9orf65{{!}}KIAA0367 | ||
|gene_description=prune homolog 2 | |gene_description=prune homolog 2 with BCH domain | ||
|gene_name=PRUNE2 | |gene_name=PRUNE2 | ||
|gene_type=protein-coding | |gene_type=protein-coding | ||
|nearest_ensembl=ENSG00000106772 | |nearest_ensembl=ENSG00000106772 | ||
|nearest_promoter_id= | |nearest_promoter_id=NR_131751 | ||
|nearest_refseq=NM_015225 | |nearest_refseq=NM_015225 | ||
|nearest_unigene=Hs.262857 | |nearest_unigene=Hs.262857 | ||
| Line 24: | Line 24: | ||
|start_of_center_position=76904742 | |start_of_center_position=76904742 | ||
|strand=- | |strand=- | ||
|tata_box= | |tata_box=85(CCTTTTATAGTT,+,0.00) | ||
|transcript_name= | |transcript_name= | ||
|tss_classification=no | |tss_classification=no | ||
Latest revision as of 16:31, 15 June 2021
Basic information about the TSS
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| TSS cluster detected* |
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* The number of TSS cluster called studies (maximum 16)
Gene and protein annotation
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TATA-Box annotation
| Distance to TSS: | 1345 |
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| Nearest PromoterID: | NR_131751 |
| Entrez ID: | 158471 |
| Nearest Unigene: | Hs.262857 |
| Nearest Refseq: | NM_015225 |
| Nearest Ensembl: | ENSG00000106772 |
| Gene Name: | PRUNE2 |
| Gene Alias: | BMCC1|BNIPXL|C9orf65|KIAA0367 |
| Gene Description: | prune homolog 2 with BCH domain |
| Gene Type: | protein-coding |
| CpG%: | 0.015 |
| GC%: | 0.378109 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): | 85(CCTTTTATAGTT,+,0.00) |