TSS: Hg 101564.1: Difference between revisions
From referenceTSS
No edit summary |
No edit summary |
||
| Line 8: | Line 8: | ||
|chr=chr9 | |chr=chr9 | ||
|cpg_percent=0 | |cpg_percent=0 | ||
|distance= | |distance=NA | ||
|distance_to_tss=10663 | |distance_to_tss=10663 | ||
|end=95496538 | |end=95496538 | ||
| Line 14: | Line 14: | ||
|entrez_id=5727 | |entrez_id=5727 | ||
|gc_percent=0.353234 | |gc_percent=0.353234 | ||
|gene_alias=BCNS | |gene_alias=BCNS{{!}}NBCCS{{!}}PTC{{!}}PTC1{{!}}PTCH | ||
|gene_description=patched 1 | |gene_description=patched 1 | ||
|gene_name=PTCH1 | |gene_name=PTCH1 | ||
| Line 27: | Line 27: | ||
|start_of_center_position=95496535 | |start_of_center_position=95496535 | ||
|strand=- | |strand=- | ||
|tata_box= | |tata_box=-6(TTTTTAATAGGC,+,0.00) | ||
|transcript_name= | |transcript_name= | ||
|tss_classification=no | |tss_classification=no | ||
Latest revision as of 16:43, 15 June 2021
Basic information about the TSS
|
| |||||||||||||
| TSS cluster detected* |
|---|
* The number of TSS cluster called studies (maximum 16)
Gene and protein annotation
|
|
TATA-Box annotation
| Distance to TSS: | 10663 |
|---|---|
| Nearest PromoterID: | NM_001083607 |
| Entrez ID: | 5727 |
| Nearest Unigene: | Hs.494538 |
| Nearest Refseq: | NM_000264 |
| Nearest Ensembl: | ENSG00000185920 |
| Gene Name: | PTCH1 |
| Gene Alias: | BCNS|NBCCS|PTC|PTC1|PTCH |
| Gene Description: | patched 1 |
| Gene Type: | protein-coding |
| CpG%: | 0 |
| GC%: | 0.353234 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): | -6(TTTTTAATAGGC,+,0.00) |