TSS: Hg 28437.1: Difference between revisions

Latest revision as of 18:35, 17 June 2021

Basic information about the TSS

TSS ID:	hg_28437.1
Species:	human
Chr:	chr2

Start:	55050490
End:	55050512
Strand:	-

TSS cluster detected^*

* The number of TSS cluster called studies (maximum 16)

Gene and protein annotation

Transcript_name:	BC012335
Distance:	0
GeneID:
HGNC/MGI_ID:
UniProt_ID:

Gene_name:	RTN4
Gene_symbol:
Gene_synonyms:
Gene_source:

TATA-Box annotation

Distance to TSS:	-50
Nearest PromoterID:	NM_020532
Entrez ID:	57142
Nearest Unigene:	Hs.637850
Nearest Refseq:	NM_007008
Nearest Ensembl:	ENSG00000115310
Gene Name:	RTN4
Gene Alias:	ASY\|NI220/250\|NOGO\|NSP\|NSP-CL\|Nbla00271\|Nbla10545\|RTN-X\|RTN4-A\|RTN4-B1\|RTN4-B2\|RTN4-C
Gene Description:	reticulon 4
Gene Type:	protein-coding
CpG%:	0.075
GC%:	0.696517
TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation):

@@ Line 15: / Line 15: @@
 |RTN4-B2=
 |RTN4-C=
-|all_trans=BC012335:0 BC026788:5 AF132047:12 AK075039:-19 ENST00000337526.10:-32 ENST00000317610.11:-32 ENST00000357732.8:-32 uc002ryg.4:-32 uc002rye.4:-32 uc002ryf.4:-32 AY102277:-32 AY102278:-32 AY102279:-32 AB040462:-32 AB040463:-32 AK129806:34 BC016165:-35 BC150182:-36 BC152555:-36 BC068991:-36 BC012619:40 AK098385:40 AF148537:50 AF148538:50 BC152425:57 AB020693:57 ENST00000394611.6:-86 NM_153828:-86 NM_207520:-86 NM_020532:-86 uc061jfb.1:-86 AY123246:-86 ENST00000402434.6:115 uc061jfg.1:115 BC071848:115 AB015639:125 AK130812:132 BC010737:186 AB384033:189 AM393104:189 AM393557:189 AF320999:191 AJ251383:191 AJ251384:191 CU687182:191 KJ894399:193 KJ894400:193 ENST00000404909.5:-316 uc061jfc.1:-316 AY123245:-316
+|all_trans=BC012335:0 BC026788:5 AF132047:12 AK075039:-19 ENST00000317610.11:-32 ENST00000357732.8:-32 AY102277:-32 AY102278:-32 AY102279:-32 AB040462:-32 AB040463:-32 AK129806:34 BC016165:-35 BC150182:-36 BC152555:-36 BC068991:-36 ENST00000337526.11:40 NM_153828:40 NM_020532:40 NM_207520:40 BC012619:40 AK098385:40 AF148537:50 AF148538:50 BC152425:57 AB020693:57 ENST00000394611.6:-86 NM_001321860:-86 AY123246:-86 ENST00000402434.6:115 BC071848:115 AB015639:125 AK130812:132 BC010737:186 AB384033:189 AM393104:189 AM393557:189 AF320999:191 AJ251383:191 AJ251384:191 CU687182:191 KJ894399:193 KJ894400:193 ENST00000404909.5:-316 AY123245:-316
 |chr=chr2
 |cpg_percent=0.075
 |distance=0
-|distance_to_tss=97
+|distance_to_tss=-50
 |end=55050512
 |end_of_center_position=55050502
 |entrez_id=57142
 |gc_percent=0.696517
-|gene_alias=ASY
+|gene_alias=ASY{{!}}NI220/250{{!}}NOGO{{!}}NSP{{!}}NSP-CL{{!}}Nbla00271{{!}}Nbla10545{{!}}RTN-X{{!}}RTN4-A{{!}}RTN4-B1{{!}}RTN4-B2{{!}}RTN4-C
 |gene_description=reticulon 4
 |gene_name=RTN4
 |gene_type=protein-coding
 |nearest_ensembl=ENSG00000115310
-|nearest_promoter_id=NM_207520
+|nearest_promoter_id=NM_020532
 |nearest_refseq=NM_007008
 |nearest_unigene=Hs.637850
-|num_trans=50
+|num_trans=45
 |species=human
 |start=55050490