TSS: Hg 101830.1: Difference between revisions
From referenceTSS
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|MDDGB4= | |MDDGB4= | ||
|MDDGC4= | |MDDGC4= | ||
|all_trans= | |all_trans= | ||
|chr=chr9 | |chr=chr9 | ||
|cpg_percent=0.07 | |cpg_percent=0.07 | ||
|distance= | |distance=0 | ||
|distance_to_tss= | |distance_to_tss=175 | ||
|end=105558311 | |end=105558311 | ||
|end_of_center_position=105558306 | |end_of_center_position=105558306 | ||
|entrez_id=2218 | |entrez_id=2218 | ||
|gc_percent=0.661692 | |gc_percent=0.661692 | ||
|gene_alias=CMD1X | |gene_alias=CMD1X{{!}}FCMD{{!}}LGMD2M{{!}}LGMDR13{{!}}MDDGA4{{!}}MDDGB4{{!}}MDDGC4 | ||
|gene_description=fukutin | |gene_description=fukutin | ||
|gene_name= | |gene_id=105376199 | ||
|gene_name=uncharacterized LOC105376199 | |||
|gene_source=EntrezGene:105376199 | |||
|gene_symbol=LOC105376199 | |||
|gene_synonyms= | |||
|gene_type=protein-coding | |gene_type=protein-coding | ||
|hgnc_mgi_id= | |||
|nearest_ensembl=ENSG00000106692 | |nearest_ensembl=ENSG00000106692 | ||
|nearest_promoter_id= | |nearest_promoter_id=NM_001351502 | ||
|nearest_refseq=NM_006731 | |nearest_refseq=NM_006731 | ||
|nearest_unigene=Hs.55777 | |nearest_unigene=Hs.55777 | ||
|num_trans= | |num_trans=105376199 | ||
|species=human | |species=human | ||
|start=105558300 | |start=105558300 | ||
|start_of_center_position=105558305 | |start_of_center_position=105558305 | ||
|strand=- | |strand=- | ||
|transcript_name=ENST00000421614. | |transcript_name=ENST00000421614.2 | ||
|tss_classification=yes | |tss_classification=yes | ||
|tss_id=hg_101830.1 | |tss_id=hg_101830.1 | ||
|tss_score=1 | |tss_score=1 | ||
|uniprot_id= | |||
}} | }} | ||
Latest revision as of 18:13, 19 July 2021
Basic information about the TSS
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| TSS cluster detected* |
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* The number of TSS cluster called studies (maximum 16)
Gene and protein annotation
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TATA-Box annotation
| Distance to TSS: | 175 |
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| Nearest PromoterID: | NM_001351502 |
| Entrez ID: | 2218 |
| Nearest Unigene: | Hs.55777 |
| Nearest Refseq: | NM_006731 |
| Nearest Ensembl: | ENSG00000106692 |
| Gene Name: | uncharacterized LOC105376199 |
| Gene Alias: | CMD1X|FCMD|LGMD2M|LGMDR13|MDDGA4|MDDGB4|MDDGC4 |
| Gene Description: | fukutin |
| Gene Type: | protein-coding |
| CpG%: | 0.07 |
| GC%: | 0.661692 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
TSS expression
Expression data not found.