TSS: Hg 101886.1: Difference between revisions
From referenceTSS
No edit summary |
No edit summary |
||
| Line 3: | Line 3: | ||
|chr=chr9 | |chr=chr9 | ||
|cpg_percent=0.05 | |cpg_percent=0.05 | ||
|distance= | |distance=NA | ||
|distance_to_tss=65337 | |distance_to_tss=65337 | ||
|end=109255631 | |end=109255631 | ||
| Line 9: | Line 9: | ||
|entrez_id=54566 | |entrez_id=54566 | ||
|gc_percent=0.537313 | |gc_percent=0.537313 | ||
|gene_alias=CG1 | |gene_alias=CG1{{!}}EHM2 | ||
|gene_description=erythrocyte membrane protein band 4.1 like 4B | |gene_description=erythrocyte membrane protein band 4.1 like 4B | ||
|gene_name=EPB41L4B | |gene_name=EPB41L4B | ||
|gene_type=protein-coding | |gene_type=protein-coding | ||
|nearest_ensembl=ENSG00000095203 | |nearest_ensembl=ENSG00000095203 | ||
|nearest_promoter_id= | |nearest_promoter_id=NM_019114 | ||
|nearest_refseq=NM_018424 | |nearest_refseq=NM_018424 | ||
|nearest_unigene=Hs.591901 | |nearest_unigene=Hs.591901 | ||
| Line 22: | Line 22: | ||
|start_of_center_position=109255626 | |start_of_center_position=109255626 | ||
|strand=- | |strand=- | ||
|tata_box= | |tata_box=-64(TCCTCTTTAAGG,-,0.00),-61(TCTTTAAGGGAC,+,0.00) | ||
|transcript_name= | |transcript_name= | ||
|tss_classification=no | |tss_classification=no | ||
Latest revision as of 16:50, 15 June 2021
Basic information about the TSS
|
| |||||||||||||
| TSS cluster detected* |
|---|
* The number of TSS cluster called studies (maximum 16)
Gene and protein annotation
|
|
TATA-Box annotation
| Distance to TSS: | 65337 |
|---|---|
| Nearest PromoterID: | NM_019114 |
| Entrez ID: | 54566 |
| Nearest Unigene: | Hs.591901 |
| Nearest Refseq: | NM_018424 |
| Nearest Ensembl: | ENSG00000095203 |
| Gene Name: | EPB41L4B |
| Gene Alias: | CG1|EHM2 |
| Gene Description: | erythrocyte membrane protein band 4.1 like 4B |
| Gene Type: | protein-coding |
| CpG%: | 0.05 |
| GC%: | 0.537313 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): | -64(TCCTCTTTAAGG,-,0.00),-61(TCTTTAAGGGAC,+,0.00) |