TSS: Hg 101915.1: Difference between revisions
From referenceTSS
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|chr=chr9 | |chr=chr9 | ||
|cpg_percent=0 | |cpg_percent=0 | ||
|distance= | |distance=NA | ||
|distance_to_tss=-37331 | |distance_to_tss=-37331 | ||
|end=110088175 | |end=110088175 | ||
|end_of_center_position=110088170 | |end_of_center_position=110088170 | ||
|entrez_id= | |entrez_id=445815 | ||
|gc_percent=0.40796 | |gc_percent=0.40796 | ||
|gene_alias=AKAP-2 | |gene_alias=AKAP-2{{!}}AKAP-KL{{!}}AKAP2{{!}}AKAPKL{{!}}MISP2{{!}}PALM2{{!}}PRKA2 | ||
|gene_description= | |gene_description=PALM2-AKAP2 fusion | ||
|gene_name=AKAP2 | |gene_name=PALM2-AKAP2 | ||
|gene_type=protein-coding | |gene_type=protein-coding | ||
|nearest_ensembl= | |nearest_ensembl=ENSG00000157654 | ||
|nearest_promoter_id=NM_001136562 | |nearest_promoter_id=NM_001136562 | ||
|nearest_refseq= | |nearest_refseq=NM_007203 | ||
|nearest_unigene=Hs.591908 | |nearest_unigene=Hs.591908 | ||
|num_trans=0 | |num_trans=0 | ||
| Line 24: | Line 24: | ||
|start_of_center_position=110088169 | |start_of_center_position=110088169 | ||
|strand=- | |strand=- | ||
|tata_box= | |tata_box=-43(ATCTCTAAAGGG,-,0.00),-34(GGGTATTTAAAC,-,0.00) | ||
|transcript_name= | |transcript_name= | ||
|tss_classification=no | |tss_classification=no | ||
Latest revision as of 16:51, 15 June 2021
Basic information about the TSS
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| TSS cluster detected* |
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* The number of TSS cluster called studies (maximum 16)
Gene and protein annotation
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TATA-Box annotation
| Distance to TSS: | -37331 |
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| Nearest PromoterID: | NM_001136562 |
| Entrez ID: | 445815 |
| Nearest Unigene: | Hs.591908 |
| Nearest Refseq: | NM_007203 |
| Nearest Ensembl: | ENSG00000157654 |
| Gene Name: | PALM2-AKAP2 |
| Gene Alias: | AKAP-2|AKAP-KL|AKAP2|AKAPKL|MISP2|PALM2|PRKA2 |
| Gene Description: | PALM2-AKAP2 fusion |
| Gene Type: | protein-coding |
| CpG%: | 0 |
| GC%: | 0.40796 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): | -43(ATCTCTAAAGGG,-,0.00),-34(GGGTATTTAAAC,-,0.00) |